Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ZNF540Q8NDQ6 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
ZNF540Q8NDQ6 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.96■□□□□ 0.46
ZNF540Q8NDQ6 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.96■□□□□ 0.46
ZNF540Q8NDQ6 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
ZNF540Q8NDQ6 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 AC007322.1-201ENST00000426983 750 ntBASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 AC104771.1-201ENST00000603335 964 ntBASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 FAM21FP-204ENST00000608637 956 ntBASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ZNF540Q8NDQ6 AC009113.1-201ENST00000570267 2443 ntBASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 MFSD11-216ENST00000590393 1141 ntBASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 AL390961.4-201ENST00000623958 2535 ntBASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
ZNF540Q8NDQ6 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 MIR663A-201ENST00000385250 93 ntBASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
ZNF540Q8NDQ6 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms