Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 AC004911.1-201ENST00000416316 871 ntBASIC14.57□□□□□ -0.08
LINC00477Q96M19 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 AC105036.2-201ENST00000569468 176 ntBASIC14.57□□□□□ -0.08
LINC00477Q96M19 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 AC080038.1-201ENST00000611274 1154 ntBASIC14.57□□□□□ -0.08
LINC00477Q96M19 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 CRK-204ENST00000574295 1391 ntTSL 5 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC14.57□□□□□ -0.08
LINC00477Q96M19 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC00477Q96M19 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 BX276092.2-201ENST00000417668 665 ntBASIC14.56□□□□□ -0.08
LINC00477Q96M19 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 AC005829.2-201ENST00000571422 1056 ntBASIC14.56□□□□□ -0.08
LINC00477Q96M19 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.56□□□□□ -0.08
LINC00477Q96M19 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC00477Q96M19 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC14.55□□□□□ -0.08
LINC00477Q96M19 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC00477Q96M19 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms