Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SUMO3P55854 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SUMO3P55854 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SUMO3P55854 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.65■□□□□ 0.42
SUMO3P55854 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.65■□□□□ 0.42
SUMO3P55854 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SUMO3P55854 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SUMO3P55854 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SUMO3P55854 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SUMO3P55854 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.64■□□□□ 0.42
SUMO3P55854 AL135905.2-201ENST00000584934 1404 ntBASIC17.64■□□□□ 0.42
SUMO3P55854 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
SUMO3P55854 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SUMO3P55854 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.64■□□□□ 0.41
SUMO3P55854 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SUMO3P55854 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.64■□□□□ 0.41
SUMO3P55854 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.64■□□□□ 0.41
SUMO3P55854 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SUMO3P55854 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SUMO3P55854 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.64■□□□□ 0.41
SUMO3P55854 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SUMO3P55854 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SUMO3P55854 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.64■□□□□ 0.41
SUMO3P55854 TMEM191A-211ENST00000637163 1067 ntBASIC17.64■□□□□ 0.41
SUMO3P55854 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SUMO3P55854 HTR7P1-201ENST00000538670 1336 ntBASIC17.64■□□□□ 0.41
SUMO3P55854 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SUMO3P55854 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.64■□□□□ 0.41
SUMO3P55854 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SUMO3P55854 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
SUMO3P55854 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.63■□□□□ 0.41
SUMO3P55854 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.63■□□□□ 0.41
SUMO3P55854 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.63■□□□□ 0.41
SUMO3P55854 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.63■□□□□ 0.41
SUMO3P55854 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 NIFKP9-201ENST00000419265 221 ntBASIC17.63■□□□□ 0.41
SUMO3P55854 AP002982.1-201ENST00000492365 877 ntBASIC17.63■□□□□ 0.41
SUMO3P55854 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.63■□□□□ 0.41
SUMO3P55854 AL445675.2-201ENST00000620291 557 ntBASIC17.63■□□□□ 0.41
SUMO3P55854 HLA-A-209ENST00000638375 975 ntBASIC17.63■□□□□ 0.41
SUMO3P55854 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.63■□□□□ 0.41
SUMO3P55854 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.63■□□□□ 0.41
SUMO3P55854 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SUMO3P55854 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SUMO3P55854 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.63■□□□□ 0.41
SUMO3P55854 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SUMO3P55854 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.63■□□□□ 0.41
SUMO3P55854 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SUMO3P55854 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.62■□□□□ 0.41
SUMO3P55854 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.62■□□□□ 0.41
SUMO3P55854 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SUMO3P55854 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.62■□□□□ 0.41
SUMO3P55854 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SUMO3P55854 AL158047.1-201ENST00000445918 881 ntBASIC17.62■□□□□ 0.41
SUMO3P55854 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SUMO3P55854 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.62■□□□□ 0.41
SUMO3P55854 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SUMO3P55854 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.62■□□□□ 0.41
SUMO3P55854 AC104417.2-201ENST00000562989 1793 ntBASIC17.61■□□□□ 0.41
SUMO3P55854 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.61■□□□□ 0.41
SUMO3P55854 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SUMO3P55854 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms