Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMK1P53667 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMK1P53667 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 FEM1AP1-201ENST00000431297 1995 ntBASIC19.25■□□□□ 0.67
LIMK1P53667 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
LIMK1P53667 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIMK1P53667 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LIMK1P53667 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMK1P53667 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LIMK1P53667 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
LIMK1P53667 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LIMK1P53667 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMK1P53667 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LIMK1P53667 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMK1P53667 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LIMK1P53667 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMK1P53667 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMK1P53667 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMK1P53667 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMK1P53667 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LIMK1P53667 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.24■□□□□ 0.67
LIMK1P53667 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMK1P53667 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.24■□□□□ 0.67
LIMK1P53667 MFAP1P1-201ENST00000442257 1255 ntBASIC19.24■□□□□ 0.67
LIMK1P53667 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.24■□□□□ 0.67
LIMK1P53667 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMK1P53667 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMK1P53667 AL136038.3-201ENST00000561909 1096 ntBASIC19.24■□□□□ 0.67
LIMK1P53667 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
LIMK1P53667 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMK1P53667 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LIMK1P53667 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIMK1P53667 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
LIMK1P53667 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMK1P53667 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMK1P53667 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMK1P53667 AC092338.2-201ENST00000568827 1415 ntBASIC19.24■□□□□ 0.67
LIMK1P53667 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
LIMK1P53667 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.23■□□□□ 0.67
LIMK1P53667 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.23■□□□□ 0.67
LIMK1P53667 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.23■□□□□ 0.67
LIMK1P53667 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMK1P53667 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
LIMK1P53667 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.23■□□□□ 0.67
LIMK1P53667 MIR2861-201ENST00000636310 90 ntBASIC19.23■□□□□ 0.67
LIMK1P53667 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LIMK1P53667 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.23■□□□□ 0.67
LIMK1P53667 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMK1P53667 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.22■□□□□ 0.67
LIMK1P53667 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMK1P53667 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 TSPY17P-201ENST00000450329 467 ntBASIC19.22■□□□□ 0.67
LIMK1P53667 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.22■□□□□ 0.67
LIMK1P53667 AC011298.2-201ENST00000617989 482 ntBASIC19.22■□□□□ 0.67
LIMK1P53667 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LIMK1P53667 KRT8P20-201ENST00000423953 1409 ntBASIC19.22■□□□□ 0.67
LIMK1P53667 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMK1P53667 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LIMK1P53667 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMK1P53667 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
LIMK1P53667 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMK1P53667 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMK1P53667 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms