Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 AL158047.1-201ENST00000445918 881 ntBASIC19.09■□□□□ 0.65
VRK3Q8IV63 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 TMEM191A-211ENST00000637163 1067 ntBASIC19.09■□□□□ 0.65
VRK3Q8IV63 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.08■□□□□ 0.65
VRK3Q8IV63 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
VRK3Q8IV63 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VRK3Q8IV63 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VRK3Q8IV63 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VRK3Q8IV63 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VRK3Q8IV63 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VRK3Q8IV63 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
VRK3Q8IV63 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VRK3Q8IV63 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 KRT16P5-201ENST00000455284 522 ntBASIC19.08■□□□□ 0.64
VRK3Q8IV63 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 AC004264.1-201ENST00000608354 794 ntBASIC19.08■□□□□ 0.64
VRK3Q8IV63 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
VRK3Q8IV63 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VRK3Q8IV63 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 FAM197Y4-202ENST00000622692 608 ntBASIC19.07■□□□□ 0.64
VRK3Q8IV63 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VRK3Q8IV63 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VRK3Q8IV63 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 C1QL1P1-201ENST00000568105 661 ntBASIC19.06■□□□□ 0.64
VRK3Q8IV63 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VRK3Q8IV63 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
VRK3Q8IV63 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms