Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CPNE4Q96A23 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE4Q96A23 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE4Q96A23 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
CPNE4Q96A23 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.01■■□□□ 1.27
CPNE4Q96A23 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CPNE4Q96A23 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
CPNE4Q96A23 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23■■□□□ 1.27
CPNE4Q96A23 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
CPNE4Q96A23 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPNE4Q96A23 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L13-201ENST00000554103 1267 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L15-201ENST00000611059 1267 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L23-201ENST00000615195 1269 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L24-201ENST00000617576 1269 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L22-201ENST00000618238 1269 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L20-201ENST00000619712 1269 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L21-201ENST00000622058 1269 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L10-201ENST00000622460 1267 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 DUX4L25-201ENST00000624915 1269 ntBASIC22.99■■□□□ 1.27
CPNE4Q96A23 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPNE4Q96A23 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPNE4Q96A23 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.99■■□□□ 1.27
CPNE4Q96A23 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CPNE4Q96A23 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CPNE4Q96A23 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
CPNE4Q96A23 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.98■■□□□ 1.27
CPNE4Q96A23 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.98■■□□□ 1.27
CPNE4Q96A23 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
CPNE4Q96A23 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.98■■□□□ 1.27
CPNE4Q96A23 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.98■■□□□ 1.27
CPNE4Q96A23 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC22.97■■□□□ 1.27
CPNE4Q96A23 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CPNE4Q96A23 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CPNE4Q96A23 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC22.96■■□□□ 1.27
CPNE4Q96A23 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
CPNE4Q96A23 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.95■■□□□ 1.26
CPNE4Q96A23 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CPNE4Q96A23 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CPNE4Q96A23 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.95■■□□□ 1.26
CPNE4Q96A23 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CPNE4Q96A23 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CPNE4Q96A23 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CPNE4Q96A23 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.93■■□□□ 1.26
CPNE4Q96A23 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CPNE4Q96A23 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CPNE4Q96A23 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
CPNE4Q96A23 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CPNE4Q96A23 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CPNE4Q96A23 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CPNE4Q96A23 MIR3648-2-201ENST00000581792 180 ntBASIC22.92■■□□□ 1.26
CPNE4Q96A23 MIR3648-1-201ENST00000615959 180 ntBASIC22.92■■□□□ 1.26
CPNE4Q96A23 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.92■■□□□ 1.26
CPNE4Q96A23 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CPNE4Q96A23 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CPNE4Q96A23 CR559946.2-201ENST00000623684 991 ntBASIC22.91■■□□□ 1.26
CPNE4Q96A23 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC22.91■■□□□ 1.26
CPNE4Q96A23 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC22.9■■□□□ 1.26
CPNE4Q96A23 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.9■■□□□ 1.26
CPNE4Q96A23 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC22.89■■□□□ 1.26
CPNE4Q96A23 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CPNE4Q96A23 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC22.89■■□□□ 1.25
CPNE4Q96A23 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.89■■□□□ 1.25
CPNE4Q96A23 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.89■■□□□ 1.25
CPNE4Q96A23 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CPNE4Q96A23 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
CPNE4Q96A23 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.89■■□□□ 1.25
CPNE4Q96A23 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CPNE4Q96A23 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.88■■□□□ 1.25
CPNE4Q96A23 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CPNE4Q96A23 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CPNE4Q96A23 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.88■■□□□ 1.25
CPNE4Q96A23 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC22.88■■□□□ 1.25
CPNE4Q96A23 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC22.88■■□□□ 1.25
CPNE4Q96A23 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CPNE4Q96A23 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.87■■□□□ 1.25
CPNE4Q96A23 AC016575.1-201ENST00000607026 382 ntBASIC22.87■■□□□ 1.25
CPNE4Q96A23 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CPNE4Q96A23 ABCB10P3-201ENST00000561950 2166 ntBASIC22.87■■□□□ 1.25
CPNE4Q96A23 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CPNE4Q96A23 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC22.86■■□□□ 1.25
CPNE4Q96A23 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CPNE4Q96A23 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC22.85■■□□□ 1.25
CPNE4Q96A23 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CPNE4Q96A23 HLA-V-202ENST00000446817 847 ntBASIC22.85■■□□□ 1.25
CPNE4Q96A23 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CPNE4Q96A23 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CPNE4Q96A23 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.84■■□□□ 1.25
CPNE4Q96A23 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
CPNE4Q96A23 AC139426.1-201ENST00000568218 2529 ntBASIC22.84■■□□□ 1.25
CPNE4Q96A23 AC100797.4-201ENST00000631653 1827 ntBASIC22.84■■□□□ 1.25
CPNE4Q96A23 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC22.84■■□□□ 1.25
CPNE4Q96A23 AC110285.7-201ENST00000624417 1536 ntBASIC22.83■■□□□ 1.25
CPNE4Q96A23 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.25
CPNE4Q96A23 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
CPNE4Q96A23 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.83■■□□□ 1.24
CPNE4Q96A23 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.82■■□□□ 1.24
CPNE4Q96A23 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.82■■□□□ 1.24
CPNE4Q96A23 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.82■■□□□ 1.24
CPNE4Q96A23 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms