Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.27■□□□□ 0.84
LINC01006Q8NI28 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
LINC01006Q8NI28 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LINC01006Q8NI28 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LINC01006Q8NI28 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LINC01006Q8NI28 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LINC01006Q8NI28 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.26■□□□□ 0.83
LINC01006Q8NI28 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01006Q8NI28 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01006Q8NI28 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.26■□□□□ 0.83
LINC01006Q8NI28 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LINC01006Q8NI28 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LINC01006Q8NI28 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LINC01006Q8NI28 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LINC01006Q8NI28 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LINC01006Q8NI28 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
LINC01006Q8NI28 AL135925.1-201ENST00000605920 1701 ntBASIC20.24■□□□□ 0.83
LINC01006Q8NI28 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LINC01006Q8NI28 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LINC01006Q8NI28 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LINC01006Q8NI28 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LINC01006Q8NI28 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.24■□□□□ 0.83
LINC01006Q8NI28 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LINC01006Q8NI28 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
LINC01006Q8NI28 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LINC01006Q8NI28 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LINC01006Q8NI28 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC20.23■□□□□ 0.83
LINC01006Q8NI28 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LINC01006Q8NI28 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.22■□□□□ 0.83
LINC01006Q8NI28 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LINC01006Q8NI28 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LINC01006Q8NI28 AC110285.7-201ENST00000624417 1536 ntBASIC20.22■□□□□ 0.83
LINC01006Q8NI28 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LINC01006Q8NI28 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LINC01006Q8NI28 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LINC01006Q8NI28 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.21■□□□□ 0.83
LINC01006Q8NI28 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.2■□□□□ 0.82
LINC01006Q8NI28 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.2■□□□□ 0.82
LINC01006Q8NI28 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LINC01006Q8NI28 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.19■□□□□ 0.82
LINC01006Q8NI28 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.19■□□□□ 0.82
LINC01006Q8NI28 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LINC01006Q8NI28 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LINC01006Q8NI28 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.16■□□□□ 0.82
LINC01006Q8NI28 NTF6A-201ENST00000591175 560 ntBASIC20.16■□□□□ 0.82
LINC01006Q8NI28 AC148477.6-201ENST00000623746 465 ntBASIC20.16■□□□□ 0.82
LINC01006Q8NI28 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LINC01006Q8NI28 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LINC01006Q8NI28 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LINC01006Q8NI28 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LINC01006Q8NI28 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
LINC01006Q8NI28 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
LINC01006Q8NI28 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
LINC01006Q8NI28 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LINC01006Q8NI28 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LINC01006Q8NI28 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
LINC01006Q8NI28 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.12■□□□□ 0.81
LINC01006Q8NI28 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
LINC01006Q8NI28 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
LINC01006Q8NI28 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LINC01006Q8NI28 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LINC01006Q8NI28 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.11■□□□□ 0.81
LINC01006Q8NI28 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.11■□□□□ 0.81
LINC01006Q8NI28 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
LINC01006Q8NI28 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.1■□□□□ 0.81
LINC01006Q8NI28 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LINC01006Q8NI28 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LINC01006Q8NI28 AC060814.1-201ENST00000554326 538 ntBASIC20.1■□□□□ 0.81
LINC01006Q8NI28 AC012354.3-201ENST00000623734 483 ntBASIC20.1■□□□□ 0.81
LINC01006Q8NI28 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.1■□□□□ 0.81
LINC01006Q8NI28 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
LINC01006Q8NI28 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LINC01006Q8NI28 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LINC01006Q8NI28 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LINC01006Q8NI28 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.09■□□□□ 0.81
LINC01006Q8NI28 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LINC01006Q8NI28 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
LINC01006Q8NI28 MIR219A2-201ENST00000608502 1504 ntBASIC20.08■□□□□ 0.81
LINC01006Q8NI28 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.08■□□□□ 0.81
LINC01006Q8NI28 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
LINC01006Q8NI28 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LINC01006Q8NI28 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LINC01006Q8NI28 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LINC01006Q8NI28 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LINC01006Q8NI28 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.07■□□□□ 0.8
LINC01006Q8NI28 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LINC01006Q8NI28 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.06■□□□□ 0.8
LINC01006Q8NI28 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LINC01006Q8NI28 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LINC01006Q8NI28 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LINC01006Q8NI28 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LINC01006Q8NI28 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.05■□□□□ 0.8
LINC01006Q8NI28 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms