Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ST7-205ENST00000393446 2114 ntTSL 5 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 AC010864.1-201ENST00000609407 1511 ntBASIC7.8□□□□□ -1.16
SYNE1Q8NF91 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 GPX1-201ENST00000419349 1106 ntBASIC7.79□□□□□ -1.16
SYNE1Q8NF91 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
SYNE1Q8NF91 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
SYNE1Q8NF91 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 AL135925.1-201ENST00000605920 1701 ntBASIC7.76□□□□□ -1.17
SYNE1Q8NF91 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 AC022413.1-201ENST00000624602 984 ntBASIC7.76□□□□□ -1.17
SYNE1Q8NF91 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 AL033527.3-201ENST00000566366 1196 ntBASIC7.75□□□□□ -1.17
SYNE1Q8NF91 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 ST7-202ENST00000323984 2142 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 ST7-207ENST00000393449 2127 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms