Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC34.42■■■■□ 3.1
USHBP1Q8N6Y0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC34.42■■■■□ 3.1
USHBP1Q8N6Y0 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
USHBP1Q8N6Y0 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC34.39■■■■□ 3.1
USHBP1Q8N6Y0 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC34.39■■■■□ 3.1
USHBP1Q8N6Y0 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC34.38■■■■□ 3.09
USHBP1Q8N6Y0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
USHBP1Q8N6Y0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
USHBP1Q8N6Y0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC34.38■■■■□ 3.09
USHBP1Q8N6Y0 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC34.37■■■■□ 3.09
USHBP1Q8N6Y0 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
USHBP1Q8N6Y0 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
USHBP1Q8N6Y0 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
USHBP1Q8N6Y0 ABHD17AP5-201ENST00000580133 923 ntBASIC34.36■■■■□ 3.09
USHBP1Q8N6Y0 RNF126P1-201ENST00000567452 1320 ntBASIC34.35■■■■□ 3.09
USHBP1Q8N6Y0 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC34.34■■■■□ 3.09
USHBP1Q8N6Y0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC34.34■■■■□ 3.09
USHBP1Q8N6Y0 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC34.33■■■■□ 3.09
USHBP1Q8N6Y0 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC34.33■■■■□ 3.09
USHBP1Q8N6Y0 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC34.32■■■■□ 3.09
USHBP1Q8N6Y0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.09
USHBP1Q8N6Y0 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC34.32■■■■□ 3.08
USHBP1Q8N6Y0 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC34.31■■■■□ 3.08
USHBP1Q8N6Y0 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
USHBP1Q8N6Y0 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC34.3■■■■□ 3.08
USHBP1Q8N6Y0 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC34.3■■■■□ 3.08
USHBP1Q8N6Y0 AC022413.1-201ENST00000624602 984 ntBASIC34.3■■■■□ 3.08
USHBP1Q8N6Y0 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
USHBP1Q8N6Y0 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC34.29■■■■□ 3.08
USHBP1Q8N6Y0 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC34.29■■■■□ 3.08
USHBP1Q8N6Y0 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC34.29■■■■□ 3.08
USHBP1Q8N6Y0 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
USHBP1Q8N6Y0 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
USHBP1Q8N6Y0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC34.28■■■■□ 3.08
USHBP1Q8N6Y0 AC110285.7-201ENST00000624417 1536 ntBASIC34.27■■■■□ 3.08
USHBP1Q8N6Y0 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
USHBP1Q8N6Y0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC34.27■■■■□ 3.08
USHBP1Q8N6Y0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC34.26■■■■□ 3.08
USHBP1Q8N6Y0 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC34.25■■■■□ 3.07
USHBP1Q8N6Y0 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC34.25■■■■□ 3.07
USHBP1Q8N6Y0 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
USHBP1Q8N6Y0 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC34.24■■■■□ 3.07
USHBP1Q8N6Y0 AC008813.1-201ENST00000536597 885 ntBASIC34.24■■■■□ 3.07
USHBP1Q8N6Y0 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC34.24■■■■□ 3.07
USHBP1Q8N6Y0 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
USHBP1Q8N6Y0 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC34.22■■■■□ 3.07
USHBP1Q8N6Y0 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
USHBP1Q8N6Y0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC34.22■■■■□ 3.07
USHBP1Q8N6Y0 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
USHBP1Q8N6Y0 CHST11-203ENST00000547956 936 ntTSL 2 BASIC34.21■■■■□ 3.07
USHBP1Q8N6Y0 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
USHBP1Q8N6Y0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
USHBP1Q8N6Y0 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
USHBP1Q8N6Y0 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.07
USHBP1Q8N6Y0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC34.2■■■■□ 3.07
USHBP1Q8N6Y0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC34.18■■■■□ 3.06
USHBP1Q8N6Y0 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC34.18■■■■□ 3.06
USHBP1Q8N6Y0 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC34.18■■■■□ 3.06
USHBP1Q8N6Y0 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC34.18■■■■□ 3.06
USHBP1Q8N6Y0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
USHBP1Q8N6Y0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC34.17■■■■□ 3.06
USHBP1Q8N6Y0 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC34.16■■■■□ 3.06
USHBP1Q8N6Y0 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
USHBP1Q8N6Y0 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
USHBP1Q8N6Y0 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
USHBP1Q8N6Y0 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC34.15■■■■□ 3.06
USHBP1Q8N6Y0 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC34.15■■■■□ 3.06
USHBP1Q8N6Y0 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC34.15■■■■□ 3.06
USHBP1Q8N6Y0 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC34.14■■■■□ 3.06
USHBP1Q8N6Y0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC34.13■■■■□ 3.05
USHBP1Q8N6Y0 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC34.13■■■■□ 3.05
USHBP1Q8N6Y0 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC34.12■■■■□ 3.05
USHBP1Q8N6Y0 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
USHBP1Q8N6Y0 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
USHBP1Q8N6Y0 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC34.12■■■■□ 3.05
USHBP1Q8N6Y0 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
USHBP1Q8N6Y0 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
USHBP1Q8N6Y0 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
USHBP1Q8N6Y0 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
USHBP1Q8N6Y0 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC34.1■■■■□ 3.05
USHBP1Q8N6Y0 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
USHBP1Q8N6Y0 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
USHBP1Q8N6Y0 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
USHBP1Q8N6Y0 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC34.07■■■■□ 3.05
USHBP1Q8N6Y0 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC34.07■■■■□ 3.04
USHBP1Q8N6Y0 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC34.07■■■■□ 3.04
USHBP1Q8N6Y0 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC34.07■■■■□ 3.04
USHBP1Q8N6Y0 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
USHBP1Q8N6Y0 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC34.06■■■■□ 3.04
USHBP1Q8N6Y0 PEX7-203ENST00000541292 945 ntTSL 5 BASIC34.06■■■■□ 3.04
USHBP1Q8N6Y0 AC060814.1-201ENST00000554326 538 ntBASIC34.06■■■■□ 3.04
USHBP1Q8N6Y0 NTF6A-201ENST00000591175 560 ntBASIC34.06■■■■□ 3.04
USHBP1Q8N6Y0 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC34.05■■■■□ 3.04
USHBP1Q8N6Y0 AC148477.6-201ENST00000623746 465 ntBASIC34.05■■■■□ 3.04
USHBP1Q8N6Y0 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
USHBP1Q8N6Y0 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
USHBP1Q8N6Y0 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC34.04■■■■□ 3.04
USHBP1Q8N6Y0 MIR219A2-201ENST00000608502 1504 ntBASIC34.03■■■■□ 3.04
USHBP1Q8N6Y0 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC34.02■■■■□ 3.04
USHBP1Q8N6Y0 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC34.02■■■■□ 3.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms