Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 YRF1-1YDR545W 5391 nt8.56□□□□□ -1.04
MSH1P25846 YRF1-5YLR467W 5391 nt8.56□□□□□ -1.04
MSH1P25846 YRF1-8YOR396W 5391 nt8.56□□□□□ -1.04
MSH1P25846 ERR3YMR323W 1314 nt8.55□□□□□ -1.04
MSH1P25846 ERR1YOR393W 1314 nt8.55□□□□□ -1.04
MSH1P25846 ERR2YPL281C 1314 nt8.55□□□□□ -1.04
MSH1P25846 TMS1YDR105C 1422 nt8.55□□□□□ -1.04
MSH1P25846 RRT6YGL146C 936 nt8.55□□□□□ -1.04
MSH1P25846 TIF3YPR163C 1311 nt8.54□□□□□ -1.04
MSH1P25846 SGF73YGL066W 1974 nt8.53□□□□□ -1.04
MSH1P25846 NAM8YHR086W 1572 nt8.53□□□□□ -1.04
MSH1P25846 FRA1YLL029W 2250 nt8.53□□□□□ -1.04
MSH1P25846 CTF3YLR381W 2202 nt8.53□□□□□ -1.04
MSH1P25846 YJL064WYJL064W 396 nt8.52□□□□□ -1.05
MSH1P25846 YJR149WYJR149W 1215 nt8.52□□□□□ -1.05
MSH1P25846 YBR056WYBR056W 1506 nt8.51□□□□□ -1.05
MSH1P25846 LRO1YNR008W 1986 nt8.51□□□□□ -1.05
MSH1P25846 PAU19YMR325W 375 nt8.49□□□□□ -1.05
MSH1P25846 ATO2YNR002C 849 nt8.49□□□□□ -1.05
MSH1P25846 PUP1YOR157C 786 nt8.49□□□□□ -1.05
MSH1P25846 GLY1YEL046C 1164 nt8.48□□□□□ -1.05
MSH1P25846 APS2YJR058C 444 nt8.48□□□□□ -1.05
MSH1P25846 KRE1YNL322C 942 nt8.48□□□□□ -1.05
MSH1P25846 RPL2AYFR031C-A 765 nt8.47□□□□□ -1.05
MSH1P25846 NIF3YGL221C 867 nt8.47□□□□□ -1.05
MSH1P25846 INM1YHR046C 888 nt8.47□□□□□ -1.05
MSH1P25846 BUD31YCR063W 474 nt8.46□□□□□ -1.06
MSH1P25846 LEU2YCL018W 1095 nt8.46□□□□□ -1.06
MSH1P25846 SAM50YNL026W 1455 nt8.45□□□□□ -1.06
MSH1P25846 AQR1YNL065W 1761 nt8.45□□□□□ -1.06
MSH1P25846 TGL5YOR081C 2250 nt8.45□□□□□ -1.06
MSH1P25846 POB3YML069W 1659 nt8.44□□□□□ -1.06
MSH1P25846 YIL177CYIL177C 5277 nt8.44□□□□□ -1.06
MSH1P25846 YLR030WYLR030W 792 nt8.43□□□□□ -1.06
MSH1P25846 REX2YLR059C 810 nt8.43□□□□□ -1.06
MSH1P25846 IGD1YFR017C 588 nt8.42□□□□□ -1.06
MSH1P25846 KTR4YBR199W 1395 nt8.42□□□□□ -1.06
MSH1P25846 PMT1YDL095W 2454 nt8.42□□□□□ -1.06
MSH1P25846 NDE1YMR145C 1683 nt8.41□□□□□ -1.06
MSH1P25846 YER137CYER137C 447 nt8.41□□□□□ -1.06
MSH1P25846 RSC9YML127W 1746 nt8.4□□□□□ -1.06
MSH1P25846 MAS2YHR024C 1449 nt8.39□□□□□ -1.07
MSH1P25846 DIP5YPL265W 1827 nt8.39□□□□□ -1.07
MSH1P25846 BUB2YMR055C 921 nt8.39□□□□□ -1.07
MSH1P25846 TPO1YLL028W 1761 nt8.39□□□□□ -1.07
MSH1P25846 YKR018CYKR018C 2178 nt8.39□□□□□ -1.07
MSH1P25846 YRF1-3YGR296W 5580 nt8.39□□□□□ -1.07
MSH1P25846 YRF1-6YNL339C 5580 nt8.39□□□□□ -1.07
MSH1P25846 YRF1-7YPL283C 5580 nt8.39□□□□□ -1.07
MSH1P25846 AFG2YLR397C 2343 nt8.38□□□□□ -1.07
MSH1P25846 MRP7YNL005C 1116 nt8.38□□□□□ -1.07
MSH1P25846 FSH2YMR222C 672 nt8.37□□□□□ -1.07
MSH1P25846 ARO3YDR035W 1113 nt8.36□□□□□ -1.07
MSH1P25846 ELP6YMR312W 822 nt8.36□□□□□ -1.07
MSH1P25846 THP3YPR045C 1413 nt8.36□□□□□ -1.07
MSH1P25846 AVL9YLR114C 2295 nt8.36□□□□□ -1.07
MSH1P25846 YIL108WYIL108W 2091 nt8.35□□□□□ -1.07
MSH1P25846 SNA3YJL151C 402 nt8.35□□□□□ -1.07
MSH1P25846 TDA4YJR116W 840 nt8.35□□□□□ -1.07
MSH1P25846 SPE2YOL052C 1191 nt8.35□□□□□ -1.07
MSH1P25846 MTC6YHR151C 1581 nt8.35□□□□□ -1.07
MSH1P25846 BNA3YJL060W 1335 nt8.34□□□□□ -1.07
MSH1P25846 PDC5YLR134W 1692 nt8.34□□□□□ -1.07
MSH1P25846 SLG1YOR008C 1137 nt8.34□□□□□ -1.07
MSH1P25846 YCR025CYCR025C 411 nt8.33□□□□□ -1.08
MSH1P25846 IPL1YPL209C 1104 nt8.32□□□□□ -1.08
MSH1P25846 YNL040WYNL040W 1371 nt8.32□□□□□ -1.08
MSH1P25846 ALG7YBR243C 1347 nt8.31□□□□□ -1.08
MSH1P25846 CKB1YGL019W 837 nt8.31□□□□□ -1.08
MSH1P25846 YPT11YNL304W 1254 nt8.31□□□□□ -1.08
MSH1P25846 EHT1YBR177C 1356 nt8.31□□□□□ -1.08
MSH1P25846 ADE5,7YGL234W 2409 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)DtA(AGC)D 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)FtA(AGC)F 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)GtA(AGC)G 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)HtA(AGC)H 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)JtA(AGC)J 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)K1tA(AGC)K1 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)K2tA(AGC)K2 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)LtA(AGC)L 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)M1tA(AGC)M1 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)M2tA(AGC)M2 73 nt8.3□□□□□ -1.08
MSH1P25846 tA(AGC)PtA(AGC)P 73 nt8.3□□□□□ -1.08
MSH1P25846 NAS2YIL007C 663 nt8.3□□□□□ -1.08
MSH1P25846 RMD8YFR048W 1989 nt8.3□□□□□ -1.08
MSH1P25846 PEX28YHR150W 1740 nt8.29□□□□□ -1.08
MSH1P25846 PRB1YEL060C 1908 nt8.29□□□□□ -1.08
MSH1P25846 YIR035CYIR035C 765 nt8.29□□□□□ -1.08
MSH1P25846 YPL041CYPL041C 624 nt8.29□□□□□ -1.08
MSH1P25846 MAL31YBR298C 1845 nt8.29□□□□□ -1.08
MSH1P25846 YCP4YCR004C 744 nt8.28□□□□□ -1.08
MSH1P25846 ECM10YEL030W 1935 nt8.28□□□□□ -1.08
MSH1P25846 RPL12BYDR418W 498 nt8.27□□□□□ -1.09
MSH1P25846 YOR041CYOR041C 432 nt8.27□□□□□ -1.09
MSH1P25846 YBL113CYBL113C 2379 nt8.26□□□□□ -1.09
MSH1P25846 FLX1YIL134W 936 nt8.26□□□□□ -1.09
MSH1P25846 RUP1YOR138C 2016 nt8.25□□□□□ -1.09
MSH1P25846 YLR173WYLR173W 1827 nt8.24□□□□□ -1.09
MSH1P25846 SEC24YIL109C 2781 nt8.24□□□□□ -1.09
MSH1P25846 MOB1YIL106W 945 nt8.24□□□□□ -1.09
Retrieved 100 of 7,029 protein–RNA pairs in 48.5 ms