RNA–Protein interactions for RNA: YLR397C

AFG2, Transcript of ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex, yeastyeast

Gene AFG2, Length 2,343 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
AFG2YLR397C BFR2Q06631 534 aaKnown RBP11.66□□□□□ -0.54
AFG2YLR397C RQC2Q12532 1038 aaKnown RBP11.57□□□□□ -0.56
AFG2YLR397C NOP2P40991 618 aaKnown RBP10.86□□□□□ -0.67
AFG2YLR397C NSR1P27476 414 aaKnown RBP RIP-Chip data10.57□□□□□ -0.72not detected
AFG2YLR397C EBP2P36049 427 aaKnown RBP10.57□□□□□ -0.72
AFG2YLR397C CAB3P36076 571 aa10.51□□□□□ -0.73
AFG2YLR397C URN1Q06525 465 aaKnown RBP10.47□□□□□ -0.73
AFG2YLR397C SIS2P36024 562 aa10.35□□□□□ -0.75
AFG2YLR397C YPR148CQ06523 435 aa10.31□□□□□ -0.76
AFG2YLR397C AVT3P36062 692 aa10.3□□□□□ -0.76
AFG2YLR397C YFR016CP43597 1233 aaKnown RBP10.04□□□□□ -0.8
AFG2YLR397C TAF7Q05021 590 aa9.97□□□□□ -0.81
AFG2YLR397C CWC22P53333 577 aaKnown RBP9.84□□□□□ -0.83
AFG2YLR397C SKI3P17883 1432 aaKnown RBP9.8□□□□□ -0.84
AFG2YLR397C SPA2P23201 1466 aaKnown RBP9.79□□□□□ -0.84
AFG2YLR397C RSE1Q04693 1361 aaKnown RBP9.76□□□□□ -0.85
AFG2YLR397C SSN2P38931 1420 aa9.71□□□□□ -0.86
AFG2YLR397C LEO1P38439 464 aa9.7□□□□□ -0.86
AFG2YLR397C RPS0BP46654 252 aaKnown RBP9.68□□□□□ -0.86
AFG2YLR397C KRI1P42846 591 aaKnown RBP9.62□□□□□ -0.87
AFG2YLR397C AIM44Q99299 758 aa9.62□□□□□ -0.87
AFG2YLR397C DIP2Q12220 943 aaPredicted RBP9.61□□□□□ -0.87
AFG2YLR397C ENP1P38333 483 aaKnown RBP9.61□□□□□ -0.87
AFG2YLR397C TCB2P48231 1178 aa9.61□□□□□ -0.87
AFG2YLR397C SGS1P35187 1447 aa9.57□□□□□ -0.88
AFG2YLR397C ENV11P53246 860 aa9.55□□□□□ -0.88
AFG2YLR397C SPT21P35209 758 aa9.54□□□□□ -0.88
AFG2YLR397C SEC3P33332 1336 aaKnown RBP9.52□□□□□ -0.88
AFG2YLR397C DRS1P32892 752 aaKnown RBP9.51□□□□□ -0.89
AFG2YLR397C CLC1P17891 233 aa9.49□□□□□ -0.89
AFG2YLR397C MNN4P36044 1178 aa9.48□□□□□ -0.89
AFG2YLR397C SPT7P35177 1332 aa9.47□□□□□ -0.89
AFG2YLR397C TCB3Q03640 1545 aaKnown RBP9.47□□□□□ -0.89
AFG2YLR397C IME2P32581 645 aa9.47□□□□□ -0.89
AFG2YLR397C PRS1P32895 427 aaKnown RBP9.39□□□□□ -0.91
AFG2YLR397C FPR3P38911 411 aaKnown RBP9.39□□□□□ -0.91
AFG2YLR397C YGR130CP53278 816 aa9.38□□□□□ -0.91
AFG2YLR397C PSH1Q12161 406 aa9.37□□□□□ -0.91
AFG2YLR397C STH1P32597 1359 aa9.36□□□□□ -0.91
AFG2YLR397C CFT1Q06632 1357 aaKnown RBP9.36□□□□□ -0.91
AFG2YLR397C DEF1P35732 738 aaKnown RBP9.36□□□□□ -0.91
AFG2YLR397C NUG1P40010 520 aaKnown RBP9.34□□□□□ -0.91
AFG2YLR397C FUN12P39730 1002 aaKnown RBP9.33□□□□□ -0.92
AFG2YLR397C SAS10Q12136 610 aaPredicted RBP9.33□□□□□ -0.92
AFG2YLR397C LEU3P08638 886 aa9.31□□□□□ -0.92
AFG2YLR397C OPY1P38271 328 aa9.31□□□□□ -0.92
AFG2YLR397C POL5P39985 1022 aaKnown RBP9.27□□□□□ -0.93
AFG2YLR397C YRB30P53107 440 aaPredicted RBP9.26□□□□□ -0.93
AFG2YLR397C FPR4Q06205 392 aaPredicted RBP9.26□□□□□ -0.93
AFG2YLR397C NOP53Q12080 455 aaKnown RBP9.26□□□□□ -0.93
AFG2YLR397C RNA1P11745 407 aaKnown RBP9.26□□□□□ -0.93
AFG2YLR397C MMS22Q06164 1454 aa9.24□□□□□ -0.93
AFG2YLR397C SWE1P32944 819 aa9.24□□□□□ -0.93
AFG2YLR397C EAF7P53911 425 aaKnown RBP9.21□□□□□ -0.94
AFG2YLR397C UFD4P33202 1483 aa9.21□□□□□ -0.94
AFG2YLR397C QCR6P00127 147 aa9.19□□□□□ -0.94
AFG2YLR397C IOC4Q04213 475 aa9.19□□□□□ -0.94
AFG2YLR397C SPT2P06843 333 aaPredicted RBP9.19□□□□□ -0.94
AFG2YLR397C RPC31P17890 251 aa9.19□□□□□ -0.94
AFG2YLR397C NAP1P25293 417 aaKnown RBP9.17□□□□□ -0.94
AFG2YLR397C XRN1P22147 1528 aaKnown RBP9.17□□□□□ -0.94
AFG2YLR397C RLF2Q12495 606 aa9.16□□□□□ -0.94
AFG2YLR397C TFA1P36100 482 aa9.16□□□□□ -0.94
AFG2YLR397C RLP24Q07915 199 aaKnown RBP9.16□□□□□ -0.94
AFG2YLR397C RAD26P40352 1085 aa9.15□□□□□ -0.94
AFG2YLR397C MTC1P47018 478 aaKnown RBP9.15□□□□□ -0.94
AFG2YLR397C MON2P48563 1636 aaPredicted RBP9.15□□□□□ -0.94
AFG2YLR397C IFH1P39520 1085 aa9.14□□□□□ -0.95
AFG2YLR397C GRX3Q03835 250 aa9.11□□□□□ -0.95
AFG2YLR397C SNF7P39929 240 aaKnown RBP9.1□□□□□ -0.95
AFG2YLR397C SPC110P32380 944 aa9.1□□□□□ -0.95
AFG2YLR397C CTR9P89105 1077 aa9.09□□□□□ -0.95
AFG2YLR397C PAF1P38351 445 aa9.09□□□□□ -0.95
AFG2YLR397C TRM732Q03496 1420 aa9.08□□□□□ -0.96
AFG2YLR397C ECM5Q03214 1411 aa9.08□□□□□ -0.96
AFG2YLR397C DJP1P40564 432 aa9.07□□□□□ -0.96
AFG2YLR397C DOS2P54858 310 aa9.07□□□□□ -0.96
AFG2YLR397C RTT106P40161 455 aa9.06□□□□□ -0.96
AFG2YLR397C YPP1P46951 817 aa9.04□□□□□ -0.96
AFG2YLR397C SPP41P38904 1435 aa9.03□□□□□ -0.96
AFG2YLR397C YTA7P40340 1379 aa9.03□□□□□ -0.96
AFG2YLR397C SLN1P39928 1220 aaPredicted RBP9.03□□□□□ -0.96
AFG2YLR397C ROX1P25042 368 aa9.02□□□□□ -0.97
AFG2YLR397C YNL011CP53980 444 aa9.02□□□□□ -0.97
AFG2YLR397C ETT1Q08421 412 aaKnown RBP9.02□□□□□ -0.97
AFG2YLR397C MSH3P25336 1018 aa9.02□□□□□ -0.97
AFG2YLR397C NMD2P38798 1089 aaKnown RBP9.01□□□□□ -0.97
AFG2YLR397C PSD2P53037 1138 aaKnown RBP9.01□□□□□ -0.97
AFG2YLR397C CLB5P30283 435 aa9□□□□□ -0.97
AFG2YLR397C SSM4P40318 1319 aa9□□□□□ -0.97
AFG2YLR397C CHD1P32657 1468 aa8.99□□□□□ -0.97
AFG2YLR397C SIC1P38634 284 aa8.98□□□□□ -0.97
AFG2YLR397C SPT6P23615 1451 aaKnown RBP8.97□□□□□ -0.97
AFG2YLR397C ECM16Q04217 1267 aaKnown RBP8.97□□□□□ -0.97
AFG2YLR397C PDR10P51533 1564 aa8.96□□□□□ -0.97
AFG2YLR397C IKI3Q06706 1349 aaKnown RBP8.96□□□□□ -0.98
AFG2YLR397C BUD4P47136 1447 aa8.96□□□□□ -0.98
AFG2YLR397C NOP58Q12499 511 aaKnown RBP8.96□□□□□ -0.98
AFG2YLR397C INO80P53115 1489 aa8.95□□□□□ -0.98
AFG2YLR397C TOP2P06786 1428 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 12 ms