RNA–Protein interactions for RNA: YCR004C

YCP4, Transcript of Protein of unknown function, yeastyeast

Gene YCP4, Length 744 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YCP4YCR004C INO80P53115 1489 aa17.95■□□□□ 0.46
YCP4YCR004C MON2P48563 1636 aaPredicted RBP17.93■□□□□ 0.46
YCP4YCR004C DNA2P38859 1522 aa17.09■□□□□ 0.33
YCP4YCR004C SWR1Q05471 1514 aa17.01■□□□□ 0.31
YCP4YCR004C KOG1P38873 1557 aa16.85■□□□□ 0.29
YCP4YCR004C TCB3Q03640 1545 aaKnown RBP16.84■□□□□ 0.29
YCP4YCR004C TY1B-DR4Q07793 1604 aa16.78■□□□□ 0.28
YCP4YCR004C RSE1Q04693 1361 aaKnown RBP16.61■□□□□ 0.25
YCP4YCR004C SGS1P35187 1447 aa16.45■□□□□ 0.22
YCP4YCR004C SPT6P23615 1451 aaKnown RBP16.18■□□□□ 0.18
YCP4YCR004C HSL1P34244 1518 aa16.17■□□□□ 0.18
YCP4YCR004C SPA2P23201 1466 aaKnown RBP16.08■□□□□ 0.16
YCP4YCR004C ECM5Q03214 1411 aa15.9■□□□□ 0.14
YCP4YCR004C MTC1P47018 478 aaKnown RBP15.82■□□□□ 0.12
YCP4YCR004C HIR3P47171 1648 aa15.81■□□□□ 0.12
YCP4YCR004C THO2P53552 1597 aaKnown RBP15.77■□□□□ 0.11
YCP4YCR004C BUD4P47136 1447 aa15.77■□□□□ 0.11
YCP4YCR004C MDS3P53094 1487 aa15.62■□□□□ 0.09
YCP4YCR004C XRN1P22147 1528 aaKnown RBP15.52■□□□□ 0.07
YCP4YCR004C PEP1P32319 1579 aa15.4■□□□□ 0.06
YCP4YCR004C REV3P14284 1504 aa15.36■□□□□ 0.05
YCP4YCR004C ATG2P53855 1592 aa15.29■□□□□ 0.04
YCP4YCR004C BPT1P14772 1559 aa15.27■□□□□ 0.03
YCP4YCR004C SKI3P17883 1432 aaKnown RBP15.09■□□□□ 0.01
YCP4YCR004C TAF2P23255 1407 aa15.08■□□□□ 0
YCP4YCR004C SSN2P38931 1420 aa15.04■□□□□ -0
YCP4YCR004C SSK2P53599 1579 aa14.99□□□□□ -0.01
YCP4YCR004C SIN3P22579 1536 aa14.98□□□□□ -0.01
YCP4YCR004C YCF1P39109 1515 aaKnown RBP14.98□□□□□ -0.01
YCP4YCR004C ESP1Q03018 1630 aa14.84□□□□□ -0.03
YCP4YCR004C UFD4P33202 1483 aa14.8□□□□□ -0.04
YCP4YCR004C SCC2Q04002 1493 aa14.64□□□□□ -0.07
YCP4YCR004C MYO2P19524 1574 aaKnown RBP14.63□□□□□ -0.07
YCP4YCR004C YPK9Q12697 1472 aa14.63□□□□□ -0.07
YCP4YCR004C DRS1P32892 752 aaKnown RBP14.61□□□□□ -0.07
YCP4YCR004C ESC1Q03661 1658 aaKnown RBP14.6□□□□□ -0.07
YCP4YCR004C CDC25P04821 1589 aa14.6□□□□□ -0.07
YCP4YCR004C MIF2P35201 549 aa14.59□□□□□ -0.07
YCP4YCR004C RQC2Q12532 1038 aaKnown RBP14.59□□□□□ -0.07
YCP4YCR004C MET5P47169 1442 aa14.57□□□□□ -0.08
YCP4YCR004C CHD1P32657 1468 aa14.57□□□□□ -0.08
YCP4YCR004C RPO31P04051 1460 aa14.53□□□□□ -0.08
YCP4YCR004C DNF1P32660 1571 aa14.51□□□□□ -0.09
YCP4YCR004C TY2B-LR1P0C2J3 1770 aa14.48□□□□□ -0.09
YCP4YCR004C TY2B-FP0CX63 1770 aa14.48□□□□□ -0.09
YCP4YCR004C TY2B-GR2P0CX64 1770 aa14.48□□□□□ -0.09
YCP4YCR004C TY2B-CP25384 1770 aa14.48□□□□□ -0.09
YCP4YCR004C TY2B-DR2Q03494 1770 aa14.48□□□□□ -0.09
YCP4YCR004C TY1B-DR1Q03855 1755 aa14.48□□□□□ -0.09
YCP4YCR004C TY2B-DR3Q07791 1770 aaKnown RBP14.48□□□□□ -0.09
YCP4YCR004C TY2B-OR1Q12113 1770 aa14.48□□□□□ -0.09
YCP4YCR004C TY2B-DR1Q12472 1770 aa14.48□□□□□ -0.09
YCP4YCR004C TY2B-OR2Q12501 1770 aa14.48□□□□□ -0.09
YCP4YCR004C LTE1P07866 1435 aa14.47□□□□□ -0.09
YCP4YCR004C TY1B-BRQ12193 1756 aa14.45□□□□□ -0.1
YCP4YCR004C TY1B-GR3Q12316 1755 aa14.45□□□□□ -0.1
YCP4YCR004C TY1B-ORQ92393 1755 aa14.45□□□□□ -0.1
YCP4YCR004C RKR1Q04781 1562 aa14.43□□□□□ -0.1
YCP4YCR004C PAN1P32521 1480 aa14.42□□□□□ -0.1
YCP4YCR004C RPA190P10964 1664 aaKnown RBP14.39□□□□□ -0.11
YCP4YCR004C GEA2P39993 1459 aaKnown RBP14.31□□□□□ -0.12
YCP4YCR004C BNI1P41832 1953 aa14.3□□□□□ -0.12
YCP4YCR004C TOP2P06786 1428 aaKnown RBP14.3□□□□□ -0.12
YCP4YCR004C TY2B-BQ12491 1770 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-HO13535 1793 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-DR5P0C2I2 1755 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-DR6P0C2I3 1755 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-LR2P0C2I5 1755 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-LR3P0C2I6 1755 aaKnown RBP14.29□□□□□ -0.12
YCP4YCR004C TY1B-PR1P0C2I9 1755 aaKnown RBP14.29□□□□□ -0.12
YCP4YCR004C TY1B-PR2P0C2J0 1756 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-PR3P0C2J1 1755 aaKnown RBP14.29□□□□□ -0.12
YCP4YCR004C TY1B-JR1P47098 1755 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-ML2Q03434 1755 aaKnown RBP14.29□□□□□ -0.12
YCP4YCR004C TY1B-ER1Q03612 1755 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-ML1Q04711 1755 aaKnown RBP14.29□□□□□ -0.12
YCP4YCR004C TY1B-GR2Q12269 1755 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-OLQ12273 1755 aa14.29□□□□□ -0.12
YCP4YCR004C TY1B-PLQ12414 1755 aaKnown RBP14.29□□□□□ -0.12
YCP4YCR004C MMS22Q06164 1454 aa14.25□□□□□ -0.13
YCP4YCR004C ITT1Q04638 464 aa14.24□□□□□ -0.13
YCP4YCR004C TY1B-DR3Q99231 1755 aa14.24□□□□□ -0.13
YCP4YCR004C TRM732Q03496 1420 aa14.23□□□□□ -0.13
YCP4YCR004C ABP1P15891 592 aaKnown RBP14.22□□□□□ -0.13
YCP4YCR004C MMS1Q06211 1407 aa14.14□□□□□ -0.15
YCP4YCR004C POL1P13382 1468 aa14.08□□□□□ -0.16
YCP4YCR004C NUP159P40477 1460 aa14.08□□□□□ -0.16
YCP4YCR004C YRF1-1P0CX20 1796 aa14.08□□□□□ -0.16
YCP4YCR004C YRF1-5P0CX21 1796 aa14.08□□□□□ -0.16
YCP4YCR004C YRF1-8P0CX22 1796 aa14.08□□□□□ -0.16
YCP4YCR004C DRS2P39524 1355 aa14.08□□□□□ -0.16
YCP4YCR004C YFR006WP43590 535 aa14.07□□□□□ -0.16
YCP4YCR004C VPS15P22219 1454 aa14.06□□□□□ -0.16
YCP4YCR004C SPP41P38904 1435 aa14.05□□□□□ -0.16
YCP4YCR004C SMC4Q12267 1418 aa14.04□□□□□ -0.16
YCP4YCR004C YOR1P53049 1477 aa14.01□□□□□ -0.17
YCP4YCR004C NTE1Q04958 1679 aa14.01□□□□□ -0.17
YCP4YCR004C STU1P38198 1513 aa13.99□□□□□ -0.17
YCP4YCR004C TY1B-JR2P47100 1755 aaKnown RBP13.99□□□□□ -0.17
YCP4YCR004C TY1B-ER2Q03619 1755 aa13.99□□□□□ -0.17
Retrieved 100 of 5,963 RNA–protein pairs in 42.5 ms