RNA–Protein interactions for RNA: YMR145C

NDE1, Transcript of Mitochondrial external NADH dehydrogenase, yeastyeast

Gene NDE1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NDE1YMR145C RQC2Q12532 1038 aaKnown RBP12.06□□□□□ -0.48
NDE1YMR145C BFR2Q06631 534 aaKnown RBP11.95□□□□□ -0.5
NDE1YMR145C URN1Q06525 465 aaKnown RBP10.88□□□□□ -0.67
NDE1YMR145C NOP2P40991 618 aaKnown RBP10.85□□□□□ -0.67
NDE1YMR145C EBP2P36049 427 aaKnown RBP10.75□□□□□ -0.69
NDE1YMR145C TAF7Q05021 590 aa10.75□□□□□ -0.69
NDE1YMR145C CAB3P36076 571 aa10.71□□□□□ -0.69
NDE1YMR145C SIS2P36024 562 aa10.6□□□□□ -0.71
NDE1YMR145C NSR1P27476 414 aaKnown RBP RIP-Chip data10.31□□□□□ -0.76not detected
NDE1YMR145C YFR016CP43597 1233 aaKnown RBP10.22□□□□□ -0.77
NDE1YMR145C AVT3P36062 692 aa10.15□□□□□ -0.79
NDE1YMR145C YPR148CQ06523 435 aa10.13□□□□□ -0.79
NDE1YMR145C RPS0BP46654 252 aaKnown RBP10.08□□□□□ -0.8
NDE1YMR145C YRB30P53107 440 aaPredicted RBP9.95□□□□□ -0.82
NDE1YMR145C DIP2Q12220 943 aaPredicted RBP9.9□□□□□ -0.83
NDE1YMR145C SKI3P17883 1432 aaKnown RBP9.89□□□□□ -0.83
NDE1YMR145C KRI1P42846 591 aaKnown RBP9.87□□□□□ -0.83
NDE1YMR145C TCB2P48231 1178 aa9.82□□□□□ -0.84
NDE1YMR145C CWC22P53333 577 aaKnown RBP9.82□□□□□ -0.84
NDE1YMR145C TFA1P36100 482 aa9.8□□□□□ -0.84
NDE1YMR145C MNN4P36044 1178 aa9.7□□□□□ -0.86
NDE1YMR145C DEF1P35732 738 aaKnown RBP9.65□□□□□ -0.86
NDE1YMR145C RSE1Q04693 1361 aaKnown RBP9.64□□□□□ -0.87
NDE1YMR145C NAP1P25293 417 aaKnown RBP9.64□□□□□ -0.87
NDE1YMR145C RLF2Q12495 606 aa9.61□□□□□ -0.87
NDE1YMR145C SPA2P23201 1466 aaKnown RBP9.61□□□□□ -0.87
NDE1YMR145C ENV11P53246 860 aa9.6□□□□□ -0.87
NDE1YMR145C ENP1P38333 483 aaKnown RBP9.59□□□□□ -0.87
NDE1YMR145C NUG1P40010 520 aaKnown RBP9.59□□□□□ -0.87
NDE1YMR145C NOP53Q12080 455 aaKnown RBP9.59□□□□□ -0.87
NDE1YMR145C AIM44Q99299 758 aa9.58□□□□□ -0.88
NDE1YMR145C QCR6P00127 147 aa9.57□□□□□ -0.88
NDE1YMR145C LEO1P38439 464 aa9.57□□□□□ -0.88
NDE1YMR145C IOC4Q04213 475 aa9.56□□□□□ -0.88
NDE1YMR145C TCB3Q03640 1545 aaKnown RBP9.53□□□□□ -0.88
NDE1YMR145C SPT7P35177 1332 aa9.5□□□□□ -0.89
NDE1YMR145C CLC1P17891 233 aa9.48□□□□□ -0.89
NDE1YMR145C YGR130CP53278 816 aa9.48□□□□□ -0.89
NDE1YMR145C FPR3P38911 411 aaKnown RBP9.48□□□□□ -0.89
NDE1YMR145C PSH1Q12161 406 aa9.48□□□□□ -0.89
NDE1YMR145C SEC3P33332 1336 aaKnown RBP9.46□□□□□ -0.89
NDE1YMR145C SPT2P06843 333 aaPredicted RBP9.42□□□□□ -0.9
NDE1YMR145C SGS1P35187 1447 aa9.41□□□□□ -0.9
NDE1YMR145C DRS1P32892 752 aaKnown RBP9.39□□□□□ -0.91
NDE1YMR145C RIX1P38883 763 aaPredicted RBP9.39□□□□□ -0.91
NDE1YMR145C RNA1P11745 407 aaKnown RBP9.39□□□□□ -0.91
NDE1YMR145C FPR4Q06205 392 aaPredicted RBP9.39□□□□□ -0.91
NDE1YMR145C HSP82P02829 709 aaKnown RBP9.38□□□□□ -0.91
NDE1YMR145C SPT21P35209 758 aa9.38□□□□□ -0.91
NDE1YMR145C PLP2Q12017 286 aa9.38□□□□□ -0.91
NDE1YMR145C IME2P32581 645 aa9.36□□□□□ -0.91
NDE1YMR145C FUN12P39730 1002 aaKnown RBP9.32□□□□□ -0.92
NDE1YMR145C STH1P32597 1359 aa9.32□□□□□ -0.92
NDE1YMR145C SSN2P38931 1420 aa9.32□□□□□ -0.92
NDE1YMR145C RLP24Q07915 199 aaKnown RBP9.31□□□□□ -0.92
NDE1YMR145C SPC110P32380 944 aa9.29□□□□□ -0.92
NDE1YMR145C YTA7P40340 1379 aa9.29□□□□□ -0.92
NDE1YMR145C INO80P53115 1489 aa9.26□□□□□ -0.93
NDE1YMR145C NMD2P38798 1089 aaKnown RBP9.26□□□□□ -0.93
NDE1YMR145C SNU71P53207 620 aaKnown RBP9.26□□□□□ -0.93
NDE1YMR145C RPN1P38764 993 aaKnown RBP9.23□□□□□ -0.93
NDE1YMR145C MTC1P47018 478 aaKnown RBP9.23□□□□□ -0.93
NDE1YMR145C IFH1P39520 1085 aa9.22□□□□□ -0.93
NDE1YMR145C PIL1P53252 339 aaKnown RBP9.22□□□□□ -0.93
NDE1YMR145C YNL011CP53980 444 aa9.22□□□□□ -0.93
NDE1YMR145C FAP1P53971 965 aa9.2□□□□□ -0.94
NDE1YMR145C TOP1P04786 769 aa9.2□□□□□ -0.94
NDE1YMR145C PRS1P32895 427 aaKnown RBP9.2□□□□□ -0.94
NDE1YMR145C EAF7P53911 425 aaKnown RBP9.2□□□□□ -0.94
NDE1YMR145C VPS4P52917 437 aa9.18□□□□□ -0.94
NDE1YMR145C OPY1P38271 328 aa9.17□□□□□ -0.94
NDE1YMR145C MDG1P53885 366 aa9.17□□□□□ -0.94
NDE1YMR145C SAS10Q12136 610 aaPredicted RBP9.14□□□□□ -0.95
NDE1YMR145C RPS0AP32905 252 aaKnown RBP9.13□□□□□ -0.95
NDE1YMR145C PAF1P38351 445 aa9.13□□□□□ -0.95
NDE1YMR145C GRX3Q03835 250 aa9.13□□□□□ -0.95
NDE1YMR145C TIF4632P39936 914 aaKnown RBP9.12□□□□□ -0.95
NDE1YMR145C SNF7P39929 240 aaKnown RBP9.1□□□□□ -0.95
NDE1YMR145C POL5P39985 1022 aaKnown RBP9.09□□□□□ -0.95
NDE1YMR145C ETT1Q08421 412 aaKnown RBP9.09□□□□□ -0.95
NDE1YMR145C MSH4P40965 878 aaPredicted RBP9.07□□□□□ -0.96
NDE1YMR145C NNF2P53253 936 aa9.07□□□□□ -0.96
NDE1YMR145C HIF1Q12373 385 aa9.07□□□□□ -0.96
NDE1YMR145C TLG1Q03322 224 aa9.05□□□□□ -0.96
NDE1YMR145C ECM5Q03214 1411 aa9.04□□□□□ -0.96
NDE1YMR145C SMC3P47037 1230 aa9.04□□□□□ -0.96
NDE1YMR145C YSH1Q06224 779 aaPredicted RBP9.04□□□□□ -0.96
NDE1YMR145C NOP58Q12499 511 aaKnown RBP9.04□□□□□ -0.96
NDE1YMR145C RAD26P40352 1085 aa9.03□□□□□ -0.96
NDE1YMR145C CTR9P89105 1077 aa9.03□□□□□ -0.96
NDE1YMR145C UFD4P33202 1483 aa9.02□□□□□ -0.97
NDE1YMR145C MSH3P25336 1018 aa9.02□□□□□ -0.97
NDE1YMR145C SIC1P38634 284 aa9.02□□□□□ -0.97
NDE1YMR145C NST1P53935 1240 aa9.02□□□□□ -0.97
NDE1YMR145C DOS2P54858 310 aa9.02□□□□□ -0.97
NDE1YMR145C NHA1Q99271 985 aa9.01□□□□□ -0.97
NDE1YMR145C BYE1P36106 594 aa9□□□□□ -0.97
NDE1YMR145C RPC31P17890 251 aa9□□□□□ -0.97
NDE1YMR145C TOA1P32773 286 aa9□□□□□ -0.97
NDE1YMR145C LTV1P34078 463 aa9□□□□□ -0.97
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms