Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HLA-DQA1P01909 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HLA-DQA1P01909 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.23■□□□□ 0.67
HLA-DQA1P01909 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DQA1P01909 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DQA1P01909 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DQA1P01909 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HLA-DQA1P01909 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DQA1P01909 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.22■□□□□ 0.67
HLA-DQA1P01909 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DQA1P01909 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
HLA-DQA1P01909 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DQA1P01909 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
HLA-DQA1P01909 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.21■□□□□ 0.67
HLA-DQA1P01909 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
HLA-DQA1P01909 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.2■□□□□ 0.66
HLA-DQA1P01909 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DQA1P01909 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DQA1P01909 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DQA1P01909 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DQA1P01909 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HLA-DQA1P01909 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.18■□□□□ 0.66
HLA-DQA1P01909 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DQA1P01909 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.17■□□□□ 0.66
HLA-DQA1P01909 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DQA1P01909 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DQA1P01909 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DQA1P01909 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DQA1P01909 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HLA-DQA1P01909 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DQA1P01909 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DQA1P01909 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HLA-DQA1P01909 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.15■□□□□ 0.66
HLA-DQA1P01909 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HLA-DQA1P01909 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HLA-DQA1P01909 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC19.15■□□□□ 0.66
HLA-DQA1P01909 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.15■□□□□ 0.66
HLA-DQA1P01909 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.66
HLA-DQA1P01909 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.14■□□□□ 0.66
HLA-DQA1P01909 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HLA-DQA1P01909 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
HLA-DQA1P01909 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC19.14■□□□□ 0.65
HLA-DQA1P01909 AC091060.1-201ENST00000623524 1766 ntBASIC19.14■□□□□ 0.65
HLA-DQA1P01909 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HLA-DQA1P01909 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HLA-DQA1P01909 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
HLA-DQA1P01909 AC020928.2-201ENST00000588717 2197 ntBASIC19.13■□□□□ 0.65
HLA-DQA1P01909 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.13■□□□□ 0.65
HLA-DQA1P01909 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.13■□□□□ 0.65
HLA-DQA1P01909 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HLA-DQA1P01909 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HLA-DQA1P01909 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.13■□□□□ 0.65
HLA-DQA1P01909 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HLA-DQA1P01909 AC093323.1-202ENST00000635031 2045 ntBASIC19.12■□□□□ 0.65
HLA-DQA1P01909 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HLA-DQA1P01909 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HLA-DQA1P01909 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
HLA-DQA1P01909 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HLA-DQA1P01909 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HLA-DQA1P01909 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.11■□□□□ 0.65
HLA-DQA1P01909 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HLA-DQA1P01909 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HLA-DQA1P01909 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HLA-DQA1P01909 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HLA-DQA1P01909 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HLA-DQA1P01909 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HLA-DQA1P01909 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HLA-DQA1P01909 LINC01003-201ENST00000564834 1764 ntBASIC19.09■□□□□ 0.65
HLA-DQA1P01909 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
HLA-DQA1P01909 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
HLA-DQA1P01909 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HLA-DQA1P01909 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HLA-DQA1P01909 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HLA-DQA1P01909 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HLA-DQA1P01909 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
HLA-DQA1P01909 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HLA-DQA1P01909 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.08■□□□□ 0.64
HLA-DQA1P01909 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HLA-DQA1P01909 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.08■□□□□ 0.64
HLA-DQA1P01909 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DQA1P01909 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DQA1P01909 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DQA1P01909 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HLA-DQA1P01909 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DQA1P01909 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DQA1P01909 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.06■□□□□ 0.64
HLA-DQA1P01909 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HLA-DQA1P01909 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.05■□□□□ 0.64
HLA-DQA1P01909 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DQA1P01909 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DQA1P01909 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC19.05■□□□□ 0.64
HLA-DQA1P01909 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DQA1P01909 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HLA-DQA1P01909 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
HLA-DQA1P01909 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.04■□□□□ 0.64
HLA-DQA1P01909 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HLA-DQA1P01909 AC145676.1-201ENST00000514988 2004 ntBASIC19.04■□□□□ 0.64
HLA-DQA1P01909 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.04■□□□□ 0.64
HLA-DQA1P01909 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
HLA-DQA1P01909 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms