Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ABCA1O95477 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA1O95477 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.49■■□□□ 1.03
ABCA1O95477 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA1O95477 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
ABCA1O95477 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.48■■□□□ 1.03
ABCA1O95477 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
ABCA1O95477 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA1O95477 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA1O95477 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
ABCA1O95477 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ABCA1O95477 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA1O95477 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA1O95477 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA1O95477 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
ABCA1O95477 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA1O95477 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA1O95477 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA1O95477 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ABCA1O95477 AC022413.1-201ENST00000624602 984 ntBASIC21.45■■□□□ 1.02
ABCA1O95477 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.44■■□□□ 1.02
ABCA1O95477 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.44■■□□□ 1.02
ABCA1O95477 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
ABCA1O95477 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ABCA1O95477 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
ABCA1O95477 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA1O95477 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA1O95477 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA1O95477 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ABCA1O95477 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ABCA1O95477 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ABCA1O95477 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.42■■□□□ 1.02
ABCA1O95477 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.41■■□□□ 1.02
ABCA1O95477 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA1O95477 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA1O95477 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA1O95477 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA1O95477 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA1O95477 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.4■■□□□ 1.02
ABCA1O95477 AL161658.1-201ENST00000623641 1967 ntBASIC21.4■■□□□ 1.02
ABCA1O95477 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.39■■□□□ 1.02
ABCA1O95477 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
ABCA1O95477 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ABCA1O95477 AC018358.1-201ENST00000631079 1402 ntBASIC21.39■■□□□ 1.01
ABCA1O95477 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.38■■□□□ 1.01
ABCA1O95477 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.38■■□□□ 1.01
ABCA1O95477 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ABCA1O95477 AC148477.6-201ENST00000623746 465 ntBASIC21.38■■□□□ 1.01
ABCA1O95477 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.37■■□□□ 1.01
ABCA1O95477 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ABCA1O95477 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.37■■□□□ 1.01
ABCA1O95477 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ABCA1O95477 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.36■■□□□ 1.01
ABCA1O95477 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.36■■□□□ 1.01
ABCA1O95477 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ABCA1O95477 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
ABCA1O95477 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.36■■□□□ 1.01
ABCA1O95477 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ABCA1O95477 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
ABCA1O95477 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
ABCA1O95477 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ABCA1O95477 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ABCA1O95477 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ABCA1O95477 AC008813.1-201ENST00000536597 885 ntBASIC21.34■■□□□ 1.01
ABCA1O95477 AC060814.1-201ENST00000554326 538 ntBASIC21.34■■□□□ 1.01
ABCA1O95477 AL033527.3-201ENST00000566366 1196 ntBASIC21.34■■□□□ 1.01
ABCA1O95477 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ABCA1O95477 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ABCA1O95477 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.34■■□□□ 1.01
ABCA1O95477 AC010864.1-201ENST00000609407 1511 ntBASIC21.33■■□□□ 1.01
ABCA1O95477 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
ABCA1O95477 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
ABCA1O95477 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.33■■□□□ 1.01
ABCA1O95477 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA1O95477 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.32■■□□□ 1
ABCA1O95477 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA1O95477 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA1O95477 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
ABCA1O95477 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA1O95477 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA1O95477 KRT18P60-201ENST00000312876 1297 ntBASIC21.32■■□□□ 1
ABCA1O95477 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.32■■□□□ 1
ABCA1O95477 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
ABCA1O95477 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.31■■□□□ 1
ABCA1O95477 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ABCA1O95477 ABCB10P1-201ENST00000614297 2181 ntBASIC21.31■■□□□ 1
ABCA1O95477 TSPY13P-201ENST00000338964 914 ntBASIC21.31■■□□□ 1
ABCA1O95477 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ABCA1O95477 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.31■■□□□ 1
ABCA1O95477 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ABCA1O95477 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
ABCA1O95477 AC135983.2-203ENST00000454486 1613 ntBASIC21.3■■□□□ 1
ABCA1O95477 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.3■■□□□ 1
ABCA1O95477 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.3■■□□□ 1
ABCA1O95477 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
ABCA1O95477 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.29■■□□□ 1
ABCA1O95477 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
ABCA1O95477 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ABCA1O95477 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
ABCA1O95477 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms