Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
NPHP1O15259 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
NPHP1O15259 NTF6A-201ENST00000591175 560 ntBASIC32.55■■■□□ 2.8
NPHP1O15259 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC32.54■■■□□ 2.8
NPHP1O15259 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC32.54■■■□□ 2.8
NPHP1O15259 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
NPHP1O15259 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC32.54■■■□□ 2.8
NPHP1O15259 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
NPHP1O15259 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
NPHP1O15259 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
NPHP1O15259 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
NPHP1O15259 AC012354.3-201ENST00000623734 483 ntBASIC32.52■■■□□ 2.8
NPHP1O15259 AC127502.1-201ENST00000399971 1502 ntBASIC32.51■■■□□ 2.8
NPHP1O15259 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
NPHP1O15259 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
NPHP1O15259 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC32.5■■■□□ 2.79
NPHP1O15259 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC32.49■■■□□ 2.79
NPHP1O15259 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
NPHP1O15259 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC32.48■■■□□ 2.79
NPHP1O15259 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC32.47■■■□□ 2.79
NPHP1O15259 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC32.47■■■□□ 2.79
NPHP1O15259 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC32.47■■■□□ 2.79
NPHP1O15259 WHAMMP2-203ENST00000563942 1603 ntBASIC32.47■■■□□ 2.79
NPHP1O15259 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
NPHP1O15259 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC32.46■■■□□ 2.79
NPHP1O15259 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
NPHP1O15259 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
NPHP1O15259 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC32.46■■■□□ 2.79
NPHP1O15259 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
NPHP1O15259 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
NPHP1O15259 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC32.45■■■□□ 2.78
NPHP1O15259 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
NPHP1O15259 AC135983.2-203ENST00000454486 1613 ntBASIC32.44■■■□□ 2.78
NPHP1O15259 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
NPHP1O15259 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
NPHP1O15259 CHST11-203ENST00000547956 936 ntTSL 2 BASIC32.42■■■□□ 2.78
NPHP1O15259 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
NPHP1O15259 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC32.42■■■□□ 2.78
NPHP1O15259 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC32.39■■■□□ 2.78
NPHP1O15259 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC32.38■■■□□ 2.77
NPHP1O15259 AC110285.7-201ENST00000624417 1536 ntBASIC32.38■■■□□ 2.77
NPHP1O15259 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
NPHP1O15259 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC32.38■■■□□ 2.77
NPHP1O15259 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
NPHP1O15259 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC32.37■■■□□ 2.77
NPHP1O15259 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC32.36■■■□□ 2.77
NPHP1O15259 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
NPHP1O15259 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.36■■■□□ 2.77
NPHP1O15259 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
NPHP1O15259 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
NPHP1O15259 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
NPHP1O15259 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC32.34■■■□□ 2.77
NPHP1O15259 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC32.33■■■□□ 2.77
NPHP1O15259 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC32.32■■■□□ 2.76
NPHP1O15259 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
NPHP1O15259 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC32.31■■■□□ 2.76
NPHP1O15259 AL033527.3-201ENST00000566366 1196 ntBASIC32.31■■■□□ 2.76
NPHP1O15259 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC32.31■■■□□ 2.76
NPHP1O15259 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
NPHP1O15259 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.29■■■□□ 2.76
NPHP1O15259 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
NPHP1O15259 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC32.29■■■□□ 2.76
NPHP1O15259 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
NPHP1O15259 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.28■■■□□ 2.76
NPHP1O15259 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
NPHP1O15259 AC060814.1-201ENST00000554326 538 ntBASIC32.27■■■□□ 2.76
NPHP1O15259 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
NPHP1O15259 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
NPHP1O15259 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
NPHP1O15259 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.25■■■□□ 2.75
NPHP1O15259 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC32.25■■■□□ 2.75
NPHP1O15259 AC148477.6-201ENST00000623746 465 ntBASIC32.25■■■□□ 2.75
NPHP1O15259 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
NPHP1O15259 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
NPHP1O15259 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC32.24■■■□□ 2.75
NPHP1O15259 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC32.24■■■□□ 2.75
NPHP1O15259 U85056.1-201ENST00000616429 682 ntBASIC32.24■■■□□ 2.75
NPHP1O15259 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC32.24■■■□□ 2.75
NPHP1O15259 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC32.23■■■□□ 2.75
NPHP1O15259 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC32.23■■■□□ 2.75
NPHP1O15259 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
NPHP1O15259 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC32.22■■■□□ 2.75
NPHP1O15259 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP1O15259 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
NPHP1O15259 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
NPHP1O15259 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
NPHP1O15259 MIR219A2-201ENST00000608502 1504 ntBASIC32.2■■■□□ 2.74
NPHP1O15259 AC018358.1-201ENST00000631079 1402 ntBASIC32.19■■■□□ 2.74
NPHP1O15259 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC32.19■■■□□ 2.74
NPHP1O15259 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
NPHP1O15259 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC32.18■■■□□ 2.74
NPHP1O15259 AL135925.1-201ENST00000605920 1701 ntBASIC32.17■■■□□ 2.74
NPHP1O15259 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
NPHP1O15259 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC32.17■■■□□ 2.74
NPHP1O15259 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC32.17■■■□□ 2.74
NPHP1O15259 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC32.17■■■□□ 2.74
NPHP1O15259 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
NPHP1O15259 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
NPHP1O15259 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
NPHP1O15259 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC32.16■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms