Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC13.65□□□□□ -0.22
CKS1BP61024 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC13.65□□□□□ -0.22
CKS1BP61024 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC13.65□□□□□ -0.22
CKS1BP61024 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC13.65□□□□□ -0.22
CKS1BP61024 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
CKS1BP61024 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CKS1BP61024 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CKS1BP61024 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC13.65□□□□□ -0.22
CKS1BP61024 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.65□□□□□ -0.22
CKS1BP61024 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
CKS1BP61024 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CKS1BP61024 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CKS1BP61024 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.64□□□□□ -0.23
CKS1BP61024 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
CKS1BP61024 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CKS1BP61024 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CKS1BP61024 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
CKS1BP61024 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC13.64□□□□□ -0.23
CKS1BP61024 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC13.64□□□□□ -0.23
CKS1BP61024 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 POU5F1P4-201ENST00000413175 1085 ntBASIC13.64□□□□□ -0.23
CKS1BP61024 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC13.64□□□□□ -0.23
CKS1BP61024 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 AC120498.10-201ENST00000621827 505 ntBASIC13.64□□□□□ -0.23
CKS1BP61024 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 MFF-207ENST00000409565 1548 ntTSL 2 BASIC13.64□□□□□ -0.23
CKS1BP61024 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC13.64□□□□□ -0.23
CKS1BP61024 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
CKS1BP61024 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC13.63□□□□□ -0.23
CKS1BP61024 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 AL162377.1-201ENST00000618844 1793 ntBASIC13.63□□□□□ -0.23
CKS1BP61024 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.63□□□□□ -0.23
CKS1BP61024 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 AC099778.1-201ENST00000568593 1911 ntBASIC13.63□□□□□ -0.23
CKS1BP61024 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC13.63□□□□□ -0.23
CKS1BP61024 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
CKS1BP61024 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC13.63□□□□□ -0.23
CKS1BP61024 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC13.63□□□□□ -0.23
CKS1BP61024 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CKS1BP61024 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC13.63□□□□□ -0.23
CKS1BP61024 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CKS1BP61024 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CKS1BP61024 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 MPST-204ENST00000404393 1329 ntTSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC13.63□□□□□ -0.23
CKS1BP61024 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CKS1BP61024 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CKS1BP61024 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC13.63□□□□□ -0.23
CKS1BP61024 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms