Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 DDX17-203ENST00000403230 2322 ntAPPRIS ALT2 TSL 1 (best)13.18□□□□□ -0.31e-7■■■□□ 16.2
SUB1P53999 DDX17-201ENST00000216019 6441 ntTSL 1 (best)11.63□□□□□ -0.551e-7■■■□□ 16.2
SUB1P53999 DDX17-205ENST00000432525 1354 ntTSL 28.29□□□□□ -1.081e-7■■■□□ 16.2
SUB1P53999 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.593e-24■■■□□ 16.2
SUB1P53999 PFDN5-207ENST00000549759 559 ntTSL 39.93□□□□□ -0.823e-24■■■□□ 16.2
SUB1P53999 PFDN5-204ENST00000547130 559 ntTSL 29.15□□□□□ -0.943e-24■■■□□ 16.2
SUB1P53999 PFDN5-216ENST00000552341 1980 ntTSL 28.62□□□□□ -1.033e-24■■■□□ 16.2
SUB1P53999 PFDN5-201ENST00000243040 564 ntTSL 1 (best)8.09□□□□□ -1.113e-24■■■□□ 16.2
SUB1P53999 PFDN5-212ENST00000550880 595 ntTSL 27.94□□□□□ -1.143e-24■■■□□ 16.2
SUB1P53999 PFDN5-206ENST00000548984 541 ntTSL 27.81□□□□□ -1.163e-24■■■□□ 16.2
SUB1P53999 PFDN5-213ENST00000550964 596 ntTSL 27.81□□□□□ -1.163e-24■■■□□ 16.2
SUB1P53999 PFDN5-218ENST00000552742 571 ntTSL 37.46□□□□□ -1.223e-24■■■□□ 16.2
SUB1P53999 PFDN5-203ENST00000351500 478 ntTSL 1 (best) BASIC7.14□□□□□ -1.273e-24■■■□□ 16.2
SUB1P53999 PFDN5-214ENST00000551018 847 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.493e-24■■■□□ 16.2
SUB1P53999 PFDN5-211ENST00000550846 392 ntTSL 2 BASIC5.75□□□□□ -1.493e-24■■■□□ 16.2
SUB1P53999 RHOT2-202ENST00000561711 644 ntTSL 316.11■□□□□ 0.177e-8■■■□□ 16.2
SUB1P53999 RHOT2-221ENST00000569358 1273 ntTSL 514.85□□□□□ -0.037e-8■■■□□ 16.2
SUB1P53999 RHOT2-213ENST00000565004 1014 ntTSL 511.58□□□□□ -0.567e-8■■■□□ 16.2
SUB1P53999 TOP3B-206ENST00000436282 2890 ntTSL 212□□□□□ -0.493e-6■■■□□ 16.2
SUB1P53999 TOP3B-214ENST00000457270 2956 ntTSL 511.27□□□□□ -0.613e-6■■■□□ 16.2
SUB1P53999 DIAPH1-206ENST00000468119 619 ntTSL 47.83□□□□□ -1.164e-7■■■□□ 16.2
SUB1P53999 RBM3-210ENST00000491236 729 ntTSL 213.89□□□□□ -0.193e-17■■■□□ 16.2
SUB1P53999 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.036e-7■■■□□ 16.2
SUB1P53999 PLIN2-205ENST00000464326 790 ntTSL 21.7□□□□□ -2.146e-7■■■□□ 16.2
SUB1P53999 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.27□□□□□ -1.731e-14■■■□□ 16.1
SUB1P53999 EIF3E-209ENST00000519627 697 ntTSL 23.57□□□□□ -1.841e-14■■■□□ 16.1
SUB1P53999 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.851e-14■■■□□ 16.1
SUB1P53999 EIF3E-212ENST00000521614 1990 ntTSL 21.88□□□□□ -2.111e-14■■■□□ 16.1
SUB1P53999 UBE2D3-203ENST00000343106 2389 ntAPPRIS P4 TSL 2 BASIC7.97□□□□□ -1.131e-14■■■□□ 16.1
SUB1P53999 UBE2D3-224ENST00000508474 4819 ntTSL 26.58□□□□□ -1.361e-14■■■□□ 16.1
SUB1P53999 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.71e-6■■■□□ 16.1
SUB1P53999 RABL6-210ENST00000484471 2746 ntTSL 515.6■□□□□ 0.091e-6■■■□□ 16.1
SUB1P53999 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.121e-6■■■□□ 16.1
SUB1P53999 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.211e-6■■■□□ 16.1
SUB1P53999 RABL6-208ENST00000464941 3361 ntTSL 213.56□□□□□ -0.241e-6■■■□□ 16.1
SUB1P53999 TUBA1B-208ENST00000552984 574 ntTSL 48.38□□□□□ -1.075e-13■■■□□ 16.1
SUB1P53999 TUBA1B-203ENST00000547476 584 ntTSL 48.13□□□□□ -1.115e-13■■■□□ 16.1
SUB1P53999 TUBA1B-207ENST00000551324 840 ntTSL 27□□□□□ -1.295e-13■■■□□ 16.1
SUB1P53999 HSPD1-212ENST00000482167 491 ntTSL 1 (best)2.95□□□□□ -1.943e-14■■■□□ 16.1
SUB1P53999 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.31□□□□□ -0.442e-10■■■□□ 16.1
SUB1P53999 RPL30-203ENST00000517489 631 ntTSL 212□□□□□ -0.492e-10■■■□□ 16.1
SUB1P53999 RPL30-211ENST00000521726 1129 ntTSL 311.88□□□□□ -0.512e-10■■■□□ 16.1
SUB1P53999 RPL30-206ENST00000518850 614 ntTSL 210.48□□□□□ -0.732e-10■■■□□ 16.1
SUB1P53999 RPL30-201ENST00000287038 543 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.952e-10■■■□□ 16.1
SUB1P53999 RPL30-205ENST00000518164 1128 ntTSL 1 (best)8.3□□□□□ -1.082e-10■■■□□ 16.1
SUB1P53999 RPL30-213ENST00000523172 274 ntTSL 5 BASIC8.3□□□□□ -1.082e-10■■■□□ 16.1
SUB1P53999 RPL30-209ENST00000521291 575 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.22e-10■■■□□ 16.1
SUB1P53999 YBX1-203ENST00000436427 1524 ntTSL 1 (best)16.82■□□□□ 0.286e-10■■■□□ 16.1
SUB1P53999 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.256e-10■■■□□ 16.1
SUB1P53999 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.66□□□□□ -1.661e-15■■■□□ 16.1
SUB1P53999 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.612e-14■■■□□ 16
SUB1P53999 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.272e-7■■■□□ 16
SUB1P53999 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC9.73□□□□□ -0.852e-7■■■□□ 16
SUB1P53999 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC12.95□□□□□ -0.341e-6■■■□□ 16
SUB1P53999 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.381e-6■■■□□ 16
SUB1P53999 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.41e-6■■■□□ 16
SUB1P53999 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.33□□□□□ -0.441e-6■■■□□ 16
SUB1P53999 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.441e-6■■■□□ 16
SUB1P53999 CNOT8-219ENST00000521729 1068 ntTSL 210.98□□□□□ -0.651e-6■■■□□ 16
SUB1P53999 CNOT8-217ENST00000521450 1158 ntTSL 2 BASIC9.86□□□□□ -0.831e-6■■■□□ 16
SUB1P53999 NDUFS1-202ENST00000423725 2631 ntTSL 2 BASIC7.64□□□□□ -1.195e-6■■■□□ 16
SUB1P53999 NDUFS1-209ENST00000457011 2171 ntTSL 2 BASIC7.5□□□□□ -1.215e-6■■■□□ 16
SUB1P53999 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.355e-6■■■□□ 16
SUB1P53999 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC6.22□□□□□ -1.415e-6■■■□□ 16
SUB1P53999 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.28□□□□□ -1.725e-6■■■□□ 16
SUB1P53999 SF3B1-209ENST00000479532 587 ntTSL 24.81□□□□□ -1.643e-8■■■□□ 16
SUB1P53999 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.692e-7■■■□□ 16
SUB1P53999 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.13□□□□□ -0.312e-7■■■□□ 16
SUB1P53999 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.78□□□□□ -0.362e-7■■■□□ 16
SUB1P53999 CLPTM1L-202ENST00000503042 3540 ntTSL 28.91□□□□□ -0.982e-7■■■□□ 16
SUB1P53999 CLPTM1L-204ENST00000503534 742 ntTSL 26.76□□□□□ -1.332e-7■■■□□ 16
SUB1P53999 GAS5-204ENST00000421068 1060 ntTSL 22.46□□□□□ -2.029e-19■■■□□ 15.9
SUB1P53999 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.195e-11■■■□□ 15.9
SUB1P53999 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC14.01□□□□□ -0.172e-22■■■□□ 15.9
SUB1P53999 NSUN2-203ENST00000504374 3217 ntTSL 213.67□□□□□ -0.225e-11■■■□□ 15.9
SUB1P53999 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.315e-11■■■□□ 15.9
SUB1P53999 PIEZO1-214ENST00000521877 686 ntTSL 212.92□□□□□ -0.345e-7■■■□□ 15.9
SUB1P53999 NSUN2-208ENST00000513888 1290 ntTSL 210.83□□□□□ -0.685e-11■■■□□ 15.9
SUB1P53999 PIEZO1-213ENST00000518793 660 ntTSL 38.93□□□□□ -0.985e-7■■■□□ 15.9
SUB1P53999 NSUN2-205ENST00000505892 3558 ntTSL 1 (best)5.76□□□□□ -1.495e-11■■■□□ 15.9
SUB1P53999 EIF4A1-206ENST00000577929 696 ntTSL 213.74□□□□□ -0.213e-6■■■□□ 15.9
SUB1P53999 EIF4A1-219ENST00000581770 447 ntTSL 29.94□□□□□ -0.823e-6■■■□□ 15.9
SUB1P53999 EIF4A1-205ENST00000577738 531 ntTSL 29.84□□□□□ -0.833e-6■■■□□ 15.9
SUB1P53999 UBAP2L-207ENST00000428931 3988 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.973e-12■■■□□ 15.9
SUB1P53999 UBAP2L-206ENST00000428595 1419 ntTSL 1 (best)8.59□□□□□ -1.033e-12■■■□□ 15.9
SUB1P53999 UBAP2L-201ENST00000271877 3997 ntTSL 5 BASIC7.61□□□□□ -1.193e-12■■■□□ 15.9
SUB1P53999 UBAP2L-214ENST00000475373 838 ntTSL 27.38□□□□□ -1.233e-12■■■□□ 15.9
SUB1P53999 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC7.13□□□□□ -1.273e-12■■■□□ 15.9
SUB1P53999 UBAP2L-202ENST00000343815 3411 ntTSL 1 (best) BASIC6.93□□□□□ -1.33e-12■■■□□ 15.9
SUB1P53999 UBAP2L-208ENST00000433615 1789 ntTSL 1 (best)6.74□□□□□ -1.333e-12■■■□□ 15.9
SUB1P53999 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.383e-12■■■□□ 15.9
SUB1P53999 UBAP2L-218ENST00000493867 677 ntTSL 34.27□□□□□ -1.733e-12■■■□□ 15.9
SUB1P53999 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.995e-8■■■□□ 15.9
SUB1P53999 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.035e-8■■■□□ 15.9
SUB1P53999 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.25e-8■■■□□ 15.9
SUB1P53999 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC8.23□□□□□ -1.095e-8■■■□□ 15.9
SUB1P53999 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.02■□□□□ 0.481e-6■■■□□ 15.9
SUB1P53999 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.191e-6■■■□□ 15.9
SUB1P53999 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.091e-6■■■□□ 15.9
SUB1P53999 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.76■■□□□ 1.392e-6■■■□□ 15.9
Retrieved 100 of 11,644 protein–RNA pairs in 16.4 ms