Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC14.09□□□□□ -0.15
TRAV4A0A0B4J268 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
TRAV4A0A0B4J268 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
TRAV4A0A0B4J268 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TRAV4A0A0B4J268 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TRAV4A0A0B4J268 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
TRAV4A0A0B4J268 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 OR2A1-AS1-201ENST00000462305 773 ntBASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 MIR4758-201ENST00000577688 71 ntBASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 TREX1-205ENST00000625293 1783 ntBASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
TRAV4A0A0B4J268 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 NCF1B-203ENST00000435988 1254 ntBASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 AC091874.3-201ENST00000512672 1195 ntBASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 AC005829.2-201ENST00000571422 1056 ntBASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TRAV4A0A0B4J268 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC14.06□□□□□ -0.16
TRAV4A0A0B4J268 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms