Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 WWOX-216ENST00000569818 525 ntBASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC15.1■□□□□ 0.01
NOTCH3Q9UM47 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 FEM1AP4-201ENST00000443167 1987 ntBASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 DUX4L26-201ENST00000489078 1255 ntBASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
NOTCH3Q9UM47 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
NOTCH3Q9UM47 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
NOTCH3Q9UM47 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
NOTCH3Q9UM47 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
NOTCH3Q9UM47 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
NOTCH3Q9UM47 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
NOTCH3Q9UM47 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 PALM-208ENST00000592155 2272 ntTSL 4 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 MIR1238-201ENST00000408483 83 ntBASIC15.08■□□□□ 0
NOTCH3Q9UM47 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
NOTCH3Q9UM47 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC15.08■□□□□ 0
NOTCH3Q9UM47 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 AC011506.1-201ENST00000474329 610 ntBASIC15.07■□□□□ 0
NOTCH3Q9UM47 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 AL031985.4-201ENST00000642138 673 ntBASIC15.07■□□□□ 0
NOTCH3Q9UM47 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.07■□□□□ 0
NOTCH3Q9UM47 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC15.07■□□□□ 0
NOTCH3Q9UM47 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NOTCH3Q9UM47 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NOTCH3Q9UM47 AK4P3-201ENST00000418260 669 ntBASIC15.06■□□□□ 0
NOTCH3Q9UM47 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms