Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 AL121603.2-201ENST00000557373 2117 ntBASIC19.28■□□□□ 0.68
CFAP54Q96N23 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 AL590627.1-203ENST00000421194 1026 ntBASIC19.28■□□□□ 0.68
CFAP54Q96N23 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CFAP54Q96N23 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.28■□□□□ 0.68
CFAP54Q96N23 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CFAP54Q96N23 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CFAP54Q96N23 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.27■□□□□ 0.68
CFAP54Q96N23 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.27■□□□□ 0.68
CFAP54Q96N23 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CFAP54Q96N23 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.27■□□□□ 0.68
CFAP54Q96N23 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CFAP54Q96N23 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CFAP54Q96N23 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CFAP54Q96N23 PMS2P2-201ENST00000425039 1128 ntBASIC19.27■□□□□ 0.68
CFAP54Q96N23 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.27■□□□□ 0.67
CFAP54Q96N23 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 AL035633.1-201ENST00000406139 838 ntBASIC19.26■□□□□ 0.67
CFAP54Q96N23 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 TSPY17P-201ENST00000450329 467 ntBASIC19.26■□□□□ 0.67
CFAP54Q96N23 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 RCC2P6-201ENST00000526625 1557 ntBASIC19.26■□□□□ 0.67
CFAP54Q96N23 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 AP002383.4-201ENST00000442518 975 ntBASIC19.26■□□□□ 0.67
CFAP54Q96N23 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 IL9RP2-201ENST00000423948 1312 ntBASIC19.26■□□□□ 0.67
CFAP54Q96N23 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CFAP54Q96N23 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.26■□□□□ 0.67
CFAP54Q96N23 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.25■□□□□ 0.67
CFAP54Q96N23 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CFAP54Q96N23 GUSBP5-202ENST00000510805 1989 ntBASIC19.25■□□□□ 0.67
CFAP54Q96N23 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CFAP54Q96N23 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CFAP54Q96N23 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.24■□□□□ 0.67
CFAP54Q96N23 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.24■□□□□ 0.67
CFAP54Q96N23 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CFAP54Q96N23 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.24■□□□□ 0.67
CFAP54Q96N23 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CFAP54Q96N23 AC008040.2-201ENST00000461049 708 ntBASIC19.24■□□□□ 0.67
CFAP54Q96N23 C1QL1P1-201ENST00000568105 661 ntBASIC19.24■□□□□ 0.67
CFAP54Q96N23 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CFAP54Q96N23 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.23■□□□□ 0.67
CFAP54Q96N23 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
CFAP54Q96N23 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CFAP54Q96N23 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.23■□□□□ 0.67
CFAP54Q96N23 KRT18P58-201ENST00000527480 1120 ntBASIC19.23■□□□□ 0.67
CFAP54Q96N23 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CFAP54Q96N23 FBXW4P1-201ENST00000426721 2239 ntBASIC19.23■□□□□ 0.67
CFAP54Q96N23 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CFAP54Q96N23 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.23■□□□□ 0.67
CFAP54Q96N23 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms