Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 ISCU-212ENST00000547005 795 ntTSL 3 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 AC005181.1-201ENST00000604782 1256 ntBASIC14.66□□□□□ -0.06
LINC00477Q96M19 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 KRT17P1-201ENST00000399211 1546 ntBASIC14.66□□□□□ -0.06
LINC00477Q96M19 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 RARRES2P6-201ENST00000567333 442 ntBASIC14.65□□□□□ -0.06
LINC00477Q96M19 AC133552.2-202ENST00000575694 574 ntBASIC14.65□□□□□ -0.06
LINC00477Q96M19 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LINC00477Q96M19 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LINC00477Q96M19 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 AC020763.4-201ENST00000623414 4170 ntBASIC14.64□□□□□ -0.07
LINC00477Q96M19 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 MIR5787-201ENST00000611784 55 ntBASIC14.64□□□□□ -0.07
LINC00477Q96M19 MAZ-216ENST00000616501 991 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC00477Q96M19 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC00477Q96M19 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 AC018553.1-201ENST00000616682 1458 ntBASIC14.63□□□□□ -0.07
LINC00477Q96M19 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 TNXA-203ENST00000507684 2038 ntBASIC14.63□□□□□ -0.07
LINC00477Q96M19 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms