Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.914e-7■■□□□ 12.7
SMNDC1O75940 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.13■□□□□ 0.814e-7■■□□□ 12.7
SMNDC1O75940 NOTUM-202ENST00000425009 996 ntTSL 321.78■■□□□ 1.082e-7■■□□□ 12.7
SMNDC1O75940 HNRNPD-211ENST00000514671 1089 ntTSL 59.65□□□□□ -0.862e-25■■□□□ 12.7
SMNDC1O75940 HNRNPD-210ENST00000514325 4597 ntTSL 1 (best)4.53□□□□□ -1.682e-25■■□□□ 12.7
SMNDC1O75940 TMC6-222ENST00000592076 693 ntTSL 314.63□□□□□ -0.071e-6■■□□□ 12.7
SMNDC1O75940 GUK1-227ENST00000485083 871 ntTSL 322.55■■□□□ 1.22e-7■■□□□ 12.7
SMNDC1O75940 GUK1-236ENST00000493209 735 ntTSL 517.38■□□□□ 0.372e-7■■□□□ 12.7
SMNDC1O75940 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.51■□□□□ 0.232e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.22e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16■□□□□ 0.152e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.55■□□□□ 0.082e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.49■□□□□ 0.072e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.49■□□□□ 0.072e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.38■□□□□ 0.052e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.022e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.59□□□□□ -0.072e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-222ENST00000442406 5129 ntTSL 1 (best)14.3□□□□□ -0.122e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.83□□□□□ -0.22e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC13.41□□□□□ -0.262e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC13.17□□□□□ -0.32e-8■■□□□ 12.7
SMNDC1O75940 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC10.67□□□□□ -0.72e-8■■□□□ 12.7
SMNDC1O75940 LINC01021-202ENST00000505775 946 ntTSL 1 (best) BASIC10.11□□□□□ -0.792e-7■■□□□ 12.7
SMNDC1O75940 LINC01021-203ENST00000510165 1106 ntTSL 1 (best) BASIC9.78□□□□□ -0.842e-7■■□□□ 12.7
SMNDC1O75940 LINC01021-205ENST00000514255 545 ntTSL 3 BASIC9.05□□□□□ -0.962e-7■■□□□ 12.7
SMNDC1O75940 LINC01021-206ENST00000514844 667 ntTSL 1 (best)8.97□□□□□ -0.972e-7■■□□□ 12.7
SMNDC1O75940 LINC01021-201ENST00000503107 458 ntTSL 1 (best)6.55□□□□□ -1.362e-7■■□□□ 12.7
SMNDC1O75940 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.52□□□□□ -1.532e-7■■□□□ 12.7
SMNDC1O75940 PTBP1-212ENST00000587136 583 ntTSL 318.86■□□□□ 0.611e-6■■□□□ 12.7
SMNDC1O75940 PTBP1-215ENST00000589883 683 ntTSL 317.25■□□□□ 0.351e-6■■□□□ 12.7
SMNDC1O75940 UBA2-210ENST00000607361 754 ntTSL 223.03■■□□□ 1.285e-11■■□□□ 12.7
SMNDC1O75940 UBA2-203ENST00000586313 1458 ntTSL 219.5■□□□□ 0.715e-11■■□□□ 12.7
SMNDC1O75940 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.265e-11■■□□□ 12.7
SMNDC1O75940 UBA2-205ENST00000590048 847 ntTSL 313.38□□□□□ -0.275e-11■■□□□ 12.7
SMNDC1O75940 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC8.79□□□□□ -15e-11■■□□□ 12.7
SMNDC1O75940 UBA2-207ENST00000592672 353 ntTSL 35.38□□□□□ -1.555e-11■■□□□ 12.7
SMNDC1O75940 HNRNPH1-245ENST00000523137 1563 ntTSL 417.04■□□□□ 0.322e-10■■□□□ 12.6
SMNDC1O75940 HNRNPH1-207ENST00000503105 559 ntTSL 315.88■□□□□ 0.138e-11■■□□□ 12.6
SMNDC1O75940 HNRNPH1-213ENST00000505811 1155 ntTSL 513.46□□□□□ -0.252e-10■■□□□ 12.6
SMNDC1O75940 HNRNPH1-215ENST00000508103 610 ntTSL 212.15□□□□□ -0.462e-10■■□□□ 12.6
SMNDC1O75940 HNRNPH1-214ENST00000506721 602 ntTSL 511.94□□□□□ -0.52e-10■■□□□ 12.6
SMNDC1O75940 HNRNPH1-217ENST00000510431 620 ntTSL 211.87□□□□□ -0.512e-10■■□□□ 12.6
SMNDC1O75940 HNRNPH1-232ENST00000519056 530 ntTSL 410.86□□□□□ -0.672e-10■■□□□ 12.6
SMNDC1O75940 DDX39A-206ENST00000587730 1813 ntTSL 1 (best)19.44■□□□□ 0.79e-7■■□□□ 12.6
SMNDC1O75940 SEMA3B-201ENST00000416295 1088 ntTSL 516.1■□□□□ 0.172e-6■■□□□ 12.6
SMNDC1O75940 DDX39A-217ENST00000592391 1080 ntTSL 513□□□□□ -0.339e-7■■□□□ 12.6
SMNDC1O75940 DDX39A-219ENST00000592927 823 ntTSL 310.56□□□□□ -0.729e-7■■□□□ 12.6
SMNDC1O75940 HDAC7-217ENST00000459625 6414 ntTSL 216.64■□□□□ 0.252e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-227ENST00000548080 1479 ntTSL 515.57■□□□□ 0.082e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-219ENST00000470668 4266 ntTSL 214.86□□□□□ -0.032e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-228ENST00000548938 2719 ntTSL 514.69□□□□□ -0.062e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.122e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-221ENST00000477203 3122 ntTSL 213.73□□□□□ -0.212e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.262e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.312e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.312e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-230ENST00000552960 3216 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.312e-6■■□□□ 12.6
SMNDC1O75940 HDAC7-226ENST00000547259 569 ntTSL 310.62□□□□□ -0.712e-6■■□□□ 12.6
SMNDC1O75940 FAM182B-205ENST00000478164 992 ntTSL 514.21□□□□□ -0.131e-18■■□□□ 12.6
SMNDC1O75940 FAM182B-207ENST00000582267 832 ntTSL 512.71□□□□□ -0.371e-18■■□□□ 12.6
SMNDC1O75940 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.055e-9■■□□□ 12.6
SMNDC1O75940 GOLGA3-205ENST00000537317 298 ntTSL 313.45□□□□□ -0.265e-9■■□□□ 12.6
SMNDC1O75940 DMXL2-201ENST00000251076 10672 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.615e-8■■□□□ 12.6
SMNDC1O75940 CHFR-219ENST00000541341 581 ntTSL 310.99□□□□□ -0.655e-9■■□□□ 12.6
SMNDC1O75940 VPS13D-212ENST00000543766 3838 ntTSL 2 BASIC9.54□□□□□ -0.883e-14■■□□□ 12.6
SMNDC1O75940 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.935e-9■■□□□ 12.6
SMNDC1O75940 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.085e-9■■□□□ 12.6
SMNDC1O75940 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.15e-9■■□□□ 12.6
SMNDC1O75940 VPS13D-211ENST00000543710 5676 ntTSL 1 (best)7.68□□□□□ -1.183e-14■■□□□ 12.6
SMNDC1O75940 SAR1A-207ENST00000452767 672 ntTSL 57.29□□□□□ -1.245e-9■■□□□ 12.6
SMNDC1O75940 CNOT6-204ENST00000504343 706 ntTSL 35.78□□□□□ -1.485e-9■■□□□ 12.6
SMNDC1O75940 DMXL2-213ENST00000560891 4759 ntTSL 1 (best)5.62□□□□□ -1.515e-8■■□□□ 12.6
SMNDC1O75940 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.675e-8■■□□□ 12.6
SMNDC1O75940 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.745e-8■■□□□ 12.6
SMNDC1O75940 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.413e-9■■□□□ 12.5
SMNDC1O75940 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.863e-9■■□□□ 12.5
SMNDC1O75940 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.213e-9■■□□□ 12.5
SMNDC1O75940 ZDHHC8-206ENST00000469212 625 ntTSL 312.95□□□□□ -0.342e-6■■□□□ 12.5
SMNDC1O75940 ARFGAP1-213ENST00000520022 558 ntTSL 415.81■□□□□ 0.123e-8■■□□□ 12.5
SMNDC1O75940 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.887e-10■■□□□ 12.5
SMNDC1O75940 ARID4B-208ENST00000466653 2315 ntTSL 217.63■□□□□ 0.417e-10■■□□□ 12.5
SMNDC1O75940 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.28■□□□□ 0.27e-10■■□□□ 12.5
SMNDC1O75940 ARID4B-204ENST00000418304 1759 ntTSL 515.87■□□□□ 0.137e-10■■□□□ 12.5
SMNDC1O75940 DDB1-205ENST00000535174 896 ntTSL 315.32■□□□□ 0.042e-11■■□□□ 12.5
SMNDC1O75940 DDB1-215ENST00000539712 1020 ntTSL 215.03■□□□□ -02e-11■■□□□ 12.5
SMNDC1O75940 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.17e-10■■□□□ 12.5
SMNDC1O75940 ARID4B-207ENST00000462969 273 ntTSL 213.05□□□□□ -0.327e-10■■□□□ 12.5
SMNDC1O75940 ARID4B-205ENST00000421364 5151 ntTSL 1 (best)12.12□□□□□ -0.477e-10■■□□□ 12.5
SMNDC1O75940 ARID4B-212ENST00000491632 3823 ntTSL 1 (best)11.77□□□□□ -0.537e-10■■□□□ 12.5
SMNDC1O75940 DDB1-223ENST00000543658 571 ntTSL 410.55□□□□□ -0.722e-11■■□□□ 12.5
SMNDC1O75940 DDB1-214ENST00000539426 805 ntTSL 39.82□□□□□ -0.842e-11■■□□□ 12.5
SMNDC1O75940 DDB1-221ENST00000543162 575 ntTSL 49.51□□□□□ -0.892e-11■■□□□ 12.5
SMNDC1O75940 DDB1-225ENST00000545930 1278 ntTSL 28.56□□□□□ -1.042e-11■■□□□ 12.5
SMNDC1O75940 DDB1-208ENST00000537120 1215 ntTSL 27.61□□□□□ -1.192e-11■■□□□ 12.5
SMNDC1O75940 ASPSCR1-216ENST00000583503 641 ntTSL 316.09■□□□□ 0.175e-7■■□□□ 12.5
SMNDC1O75940 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.45■■□□□ 1.992e-6■■□□□ 12.5
SMNDC1O75940 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.722e-6■■□□□ 12.5
SMNDC1O75940 ESRRA-206ENST00000539594 747 ntTSL 325.09■■□□□ 1.612e-6■■□□□ 12.5
SMNDC1O75940 GUSB-205ENST00000447929 1983 ntTSL 324.33■■□□□ 1.482e-8■■□□□ 12.5
SMNDC1O75940 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC23.85■■□□□ 1.412e-8■■□□□ 12.5
Retrieved 100 of 11,362 protein–RNA pairs in 157.4 ms