RNA–Protein interactions for RNA: ENST00000552960.5

HDAC7-230, Transcript of histone deacetylase 7, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene HDAC7, Length 3,216 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-230ENST00000552960 NISCHQ9Y2I1 1504 aa25.86■■□□□ 1.73
HDAC7-230ENST00000552960 CCDC180Q9P1Z9 1646 aa22.14■■□□□ 1.13
HDAC7-230ENST00000552960 DCAF8L2P0C7V8 631 aa21.83■■□□□ 1.09
HDAC7-230ENST00000552960 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
HDAC7-230ENST00000552960 ZCCHC6Q5VYS8 1495 aaKnown RBP21.73■■□□□ 1.07
HDAC7-230ENST00000552960 ABCC9O60706 1549 aa21.3■■□□□ 1
HDAC7-230ENST00000552960 SUPT5HO00267 1087 aaKnown RBP21.1■□□□□ 0.97
HDAC7-230ENST00000552960 DCAF1Q9Y4B6 1507 aa21.1■□□□□ 0.97
HDAC7-230ENST00000552960 SCRIBQ14160 1630 aa20.84■□□□□ 0.93
HDAC7-230ENST00000552960 MYO15BQ96JP2 1530 aa20.7■□□□□ 0.9
HDAC7-230ENST00000552960 NACADO15069 1562 aa20.66■□□□□ 0.9
HDAC7-230ENST00000552960 HRCP23327 699 aa20.52■□□□□ 0.88
HDAC7-230ENST00000552960 PCGF6Q9BYE7 350 aa20.5■□□□□ 0.87
HDAC7-230ENST00000552960 RB1CC1Q8TDY2 1594 aa20.48■□□□□ 0.87
HDAC7-230ENST00000552960 CHIC1Q5VXU3 224 aa20.4■□□□□ 0.86
HDAC7-230ENST00000552960 CECR2Q9BXF3 1484 aa20.33■□□□□ 0.85
HDAC7-230ENST00000552960 PPARGC1BQ86YN6 1023 aaKnown RBP20.32■□□□□ 0.84
HDAC7-230ENST00000552960 PABPN1Q86U42 306 aaKnown RBP eCLIP20.31■□□□□ 0.84
HDAC7-230ENST00000552960 RSF1Q96T23 1441 aaPredicted RBP20.28■□□□□ 0.84
HDAC7-230ENST00000552960 UNC13AQ9UPW8 1703 aa20.2■□□□□ 0.82
HDAC7-230ENST00000552960 MROH2BQ7Z745 1585 aa20.14■□□□□ 0.81
HDAC7-230ENST00000552960 LOC105371045A0A1W2PR82 267 aa20.08■□□□□ 0.8
HDAC7-230ENST00000552960 BICRAQ9NZM4 1560 aa20.03■□□□□ 0.8
HDAC7-230ENST00000552960 WIZO95785 1651 aa19.99■□□□□ 0.79
HDAC7-230ENST00000552960 BAZ1AQ9NRL2 1556 aaPredicted RBP19.86■□□□□ 0.77
HDAC7-230ENST00000552960 SMARCA4P51532 1647 aa19.8■□□□□ 0.76
HDAC7-230ENST00000552960 TRIM26Q12899 539 aaPredicted RBP19.74■□□□□ 0.75
HDAC7-230ENST00000552960 EHMT2Q96KQ7 1210 aa19.74■□□□□ 0.75
HDAC7-230ENST00000552960 FAM9AQ8IZU1 332 aaPredicted RBP19.59■□□□□ 0.73
HDAC7-230ENST00000552960 TOP2AP11388 1531 aaKnown RBP19.58■□□□□ 0.72
HDAC7-230ENST00000552960 TRIM41Q8WV44 630 aa19.57■□□□□ 0.72
HDAC7-230ENST00000552960 CCDC88BA6NC98 1476 aa19.57■□□□□ 0.72
HDAC7-230ENST00000552960 SMARCA2P51531 1590 aa19.49■□□□□ 0.71
HDAC7-230ENST00000552960 ATAD2BQ9ULI0 1458 aa19.49■□□□□ 0.71
HDAC7-230ENST00000552960 ZEB1P37275 1124 aaPredicted RBP19.4■□□□□ 0.7
HDAC7-230ENST00000552960 PEG3Q9GZU2 1588 aa19.4■□□□□ 0.7
HDAC7-230ENST00000552960 EIF4G1Q04637 1599 aaKnown RBP19.39■□□□□ 0.69
HDAC7-230ENST00000552960 BAZ1BQ9UIG0 1483 aaKnown RBP19.39■□□□□ 0.69
HDAC7-230ENST00000552960 PELP1Q8IZL8 1130 aaKnown RBP19.38■□□□□ 0.69
HDAC7-230ENST00000552960 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
HDAC7-230ENST00000552960 SCAF1Q9H7N4 1312 aaKnown RBP19.29■□□□□ 0.68
HDAC7-230ENST00000552960 NCAPD3P42695 1498 aa19.18■□□□□ 0.66
HDAC7-230ENST00000552960 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.12■□□□□ 0.65
HDAC7-230ENST00000552960 TTBK1Q5TCY1 1321 aaPredicted RBP19.09■□□□□ 0.65
HDAC7-230ENST00000552960 CC2D2AQ9P2K1 1620 aa19.09■□□□□ 0.65
HDAC7-230ENST00000552960 HMGXB3Q12766 1538 aa19.07■□□□□ 0.64
HDAC7-230ENST00000552960 SOGA1O94964 1423 aa19.07■□□□□ 0.64
HDAC7-230ENST00000552960 CCER1Q8TC90 406 aaPredicted RBP19.07■□□□□ 0.64
HDAC7-230ENST00000552960 DNAJC5BQ9UF47 199 aa19.06■□□□□ 0.64
HDAC7-230ENST00000552960 RUSC2Q8N2Y8 1516 aa19.04■□□□□ 0.64
HDAC7-230ENST00000552960 WRNQ14191 1432 aaPredicted RBP eCLIP19.03■□□□□ 0.645e-6■■■■■ 29.2
HDAC7-230ENST00000552960 SYNJ1O43426 1573 aa18.99■□□□□ 0.63
HDAC7-230ENST00000552960 NEUROD1Q13562 356 aa18.93■□□□□ 0.62
HDAC7-230ENST00000552960 ACIN1Q9UKV3 1341 aaKnown RBP18.9■□□□□ 0.62
HDAC7-230ENST00000552960 CFTRP13569 1480 aa18.87■□□□□ 0.61
HDAC7-230ENST00000552960 DIEXFQ68CQ4 756 aaKnown RBP18.85■□□□□ 0.61
HDAC7-230ENST00000552960 GTF3C3Q9Y5Q9 886 aa18.85■□□□□ 0.61
HDAC7-230ENST00000552960 CSRNP3Q8WYN3 585 aa18.84■□□□□ 0.61
HDAC7-230ENST00000552960 CADPSQ9ULU8 1353 aa18.81■□□□□ 0.6
HDAC7-230ENST00000552960 NESP48681 1621 aa18.8■□□□□ 0.6
HDAC7-230ENST00000552960 RANGAP1P46060 587 aaPredicted RBP18.79■□□□□ 0.6
HDAC7-230ENST00000552960 CENPBP07199 599 aaPredicted RBP18.78■□□□□ 0.6
HDAC7-230ENST00000552960 CUX1P39880 1505 aa18.77■□□□□ 0.59
HDAC7-230ENST00000552960 UBTFP17480 764 aaKnown RBP18.75■□□□□ 0.59
HDAC7-230ENST00000552960 TOP2BQ02880 1626 aa18.73■□□□□ 0.59
HDAC7-230ENST00000552960 YTHDC1Q96MU7 727 aaKnown RBP18.72■□□□□ 0.59
HDAC7-230ENST00000552960 BIVM-ERCC5R4GMW8 1640 aa18.64■□□□□ 0.57
HDAC7-230ENST00000552960 EEA1Q15075 1411 aa18.63■□□□□ 0.57
HDAC7-230ENST00000552960 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
HDAC7-230ENST00000552960 CEP162Q5TB80 1403 aa18.61■□□□□ 0.57
HDAC7-230ENST00000552960 RAPGEF2Q9Y4G8 1499 aa18.6■□□□□ 0.57
HDAC7-230ENST00000552960 TNIKQ9UKE5 1360 aa18.56■□□□□ 0.56
HDAC7-230ENST00000552960 GOLGA3Q08378 1498 aa18.56■□□□□ 0.56
HDAC7-230ENST00000552960 PRDM2Q13029 1718 aa18.53■□□□□ 0.56
HDAC7-230ENST00000552960 FGD5Q6ZNL6 1462 aa18.53■□□□□ 0.56
HDAC7-230ENST00000552960 MYT1Q01538 1121 aa18.53■□□□□ 0.56
HDAC7-230ENST00000552960 CEP164Q9UPV0 1460 aa18.52■□□□□ 0.55
HDAC7-230ENST00000552960 ZNF316A6NFI3 1004 aaPredicted RBP18.5■□□□□ 0.55
HDAC7-230ENST00000552960 RAD54L2Q9Y4B4 1467 aa18.5■□□□□ 0.55
HDAC7-230ENST00000552960 CUX2O14529 1486 aa18.49■□□□□ 0.55
HDAC7-230ENST00000552960 HNRNPUL2Q1KMD3 747 aaKnown RBP18.48■□□□□ 0.55
HDAC7-230ENST00000552960 KIF27Q86VH2 1401 aa18.47■□□□□ 0.55
HDAC7-230ENST00000552960 KIF21BO75037 1637 aa18.45■□□□□ 0.54
HDAC7-230ENST00000552960 TOPBP1Q92547 1522 aa18.43■□□□□ 0.54
HDAC7-230ENST00000552960 URB2Q14146 1524 aaKnown RBP18.42■□□□□ 0.54
HDAC7-230ENST00000552960 PRXQ9BXM0 1461 aa18.42■□□□□ 0.54
HDAC7-230ENST00000552960 LAMC3Q9Y6N6 1575 aa18.41■□□□□ 0.54
HDAC7-230ENST00000552960 IGF1RP08069 1367 aa18.4■□□□□ 0.54
HDAC7-230ENST00000552960 POLA1P09884 1462 aaPredicted RBP18.4■□□□□ 0.54
HDAC7-230ENST00000552960 MIER1Q8N108 512 aa18.39■□□□□ 0.53
HDAC7-230ENST00000552960 CLIP1P30622 1438 aa18.38■□□□□ 0.53
HDAC7-230ENST00000552960 DNMBPQ6XZF7 1577 aa18.36■□□□□ 0.53
HDAC7-230ENST00000552960 KIF21AQ7Z4S6 1674 aa18.36■□□□□ 0.53
HDAC7-230ENST00000552960 PDS5BQ9NTI5 1447 aa18.36■□□□□ 0.53
HDAC7-230ENST00000552960 TDRD9Q8NDG6 1382 aaKnown RBP18.33■□□□□ 0.52
HDAC7-230ENST00000552960 CARMIL1Q5VZK9 1371 aa18.29■□□□□ 0.52
HDAC7-230ENST00000552960 ERICH3Q5RHP9 1530 aa18.26■□□□□ 0.51
HDAC7-230ENST00000552960 ABCA10Q8WWZ4 1543 aa18.24■□□□□ 0.51
HDAC7-230ENST00000552960 APLP2Q06481 763 aa18.23■□□□□ 0.51
HDAC7-230ENST00000552960 P3H3Q8IVL6 736 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms