Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.023e-6■■■■■ 137.9
SF3B1O75533 FAM3A-207ENST00000416319 1113 ntTSL 521.41■■□□□ 1.023e-6■■■■■ 137.9
SF3B1O75533 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.41■■□□□ 1.023e-6■■■■■ 137.9
SF3B1O75533 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.023e-6■■■■■ 137.9
SF3B1O75533 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.39■■□□□ 1.013e-6■■■■■ 137.9
SF3B1O75533 OSBP2-210ENST00000445781 559 ntTSL 421.37■■□□□ 1.013e-6■■■■■ 137.9
SF3B1O75533 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.013e-6■■■■■ 137.9
SF3B1O75533 METTL16-207ENST00000574752 1602 ntTSL 521.32■■□□□ 13e-6■■■■■ 137.9
SF3B1O75533 FBXL8-209ENST00000523893 559 ntTSL 421.3■■□□□ 13e-6■■■■■ 137.9
SF3B1O75533 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.3■■□□□ 13e-6■■■■■ 137.9
SF3B1O75533 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 13e-6■■■■■ 137.9
SF3B1O75533 INTS1-203ENST00000479671 245 ntTSL 221.27■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 NUP85-205ENST00000577561 524 ntTSL 321.27■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 E2F4-209ENST00000567228 757 ntTSL 221.26■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 CD55-209ENST00000488171 1389 ntTSL 321.25■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.25■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 ZNF664-214ENST00000546098 474 ntTSL 421.25■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.25■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 ATG9B-206ENST00000473409 1550 ntTSL 521.24■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 CBARP-201ENST00000215376 834 ntTSL 321.24■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.23■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 ALAD-203ENST00000448137 536 ntTSL 421.23■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.997e-8■■■■■ 137.9
SF3B1O75533 PKMYT1-202ENST00000382240 1991 ntTSL 221.21■□□□□ 0.993e-6■■■■■ 137.9
SF3B1O75533 BTBD11-203ENST00000415943 723 ntTSL 521.2■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 TMEM241-213ENST00000580025 571 ntTSL 421.19■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 EXOSC8-209ENST00000489088 745 ntTSL 321.19■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 CBX8-203ENST00000427800 665 ntTSL 221.19■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 TMEM241-207ENST00000497608 669 ntTSL 321.19■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 GCDH-214ENST00000591043 1764 ntTSL 521.16■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.15■□□□□ 0.983e-6■■■■■ 137.9
SF3B1O75533 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.14■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 TSPAN32-205ENST00000437313 734 ntTSL 521.13■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 TSPAN32-209ENST00000479508 741 ntTSL 221.13■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 ZNF48-203ENST00000524644 912 ntTSL 221.13■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 TSPAN32-203ENST00000381117 798 ntTSL 1 (best)21.13■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 DLD-213ENST00000494441 707 ntTSL 321.12■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 BACH2-206ENST00000472023 498 ntTSL 321.12■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 CBX8-204ENST00000485449 581 ntTSL 321.11■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 KIAA1841-207ENST00000482513 2640 ntTSL 221.09■□□□□ 0.973e-6■■■■■ 137.9
SF3B1O75533 TRMT44-202ENST00000504134 660 ntTSL 321.07■□□□□ 0.962e-11■■■■■ 137.9
SF3B1O75533 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.07■□□□□ 0.962e-11■■■■■ 137.9
SF3B1O75533 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.963e-6■■■■■ 137.9
SF3B1O75533 EIF2B3-202ENST00000372182 705 ntTSL 321.03■□□□□ 0.963e-6■■■■■ 137.9
SF3B1O75533 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.953e-6■■■■■ 137.9
SF3B1O75533 ILVBL-204ENST00000527093 1090 ntTSL 1 (best)20.99■□□□□ 0.953e-6■■■■■ 137.9
SF3B1O75533 CLIP2-206ENST00000487091 989 ntTSL 1 (best)20.98■□□□□ 0.953e-6■■■■■ 137.9
SF3B1O75533 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.98■□□□□ 0.953e-6■■■■■ 137.9
SF3B1O75533 TMEM234-210ENST00000489170 1412 ntTSL 1 (best)20.97■□□□□ 0.953e-6■■■■■ 137.9
SF3B1O75533 FAM3A-211ENST00000433619 706 ntTSL 520.97■□□□□ 0.953e-6■■■■■ 137.9
SF3B1O75533 GCDH-202ENST00000421816 1109 ntTSL 220.97■□□□□ 0.953e-6■■■■■ 137.9
SF3B1O75533 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.943e-6■■■■■ 137.9
SF3B1O75533 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.943e-6■■■■■ 137.9
SF3B1O75533 ILVBL-205ENST00000531635 947 ntTSL 320.94■□□□□ 0.943e-6■■■■■ 137.9
SF3B1O75533 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.943e-6■■■■■ 137.9
SF3B1O75533 UBE2E2-201ENST00000335798 1330 ntTSL 1 (best)20.93■□□□□ 0.943e-6■■■■■ 137.9
SF3B1O75533 UBE2E2-205ENST00000452894 665 ntTSL 320.89■□□□□ 0.933e-6■■■■■ 137.9
SF3B1O75533 LMF1-213ENST00000568964 853 ntTSL 220.86■□□□□ 0.933e-6■■■■■ 137.9
SF3B1O75533 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.933e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-205ENST00000585866 686 ntTSL 220.84■□□□□ 0.933e-6■■■■■ 137.9
SF3B1O75533 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.78■□□□□ 0.923e-6■■■■■ 137.9
SF3B1O75533 EPAS1-202ENST00000449347 1067 ntTSL 320.76■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 STX18-AS1-201ENST00000499430 665 ntTSL 220.76■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 MMP25-AS1-208ENST00000573953 1001 ntTSL 320.76■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.75■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 CCNDBP1-205ENST00000564630 2079 ntTSL 520.74■□□□□ 0.912e-11■■■■■ 137.9
SF3B1O75533 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.74■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 EIPR1-203ENST00000406835 738 ntTSL 520.74■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 PRR14-205ENST00000563399 554 ntTSL 420.73■□□□□ 0.913e-6■■■■■ 137.9
SF3B1O75533 XPA-202ENST00000462523 1584 ntTSL 520.7■□□□□ 0.93e-6■■■■■ 137.9
SF3B1O75533 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.93e-6■■■■■ 137.9
SF3B1O75533 FAM3A-214ENST00000442929 500 ntTSL 320.66■□□□□ 0.93e-6■■■■■ 137.9
SF3B1O75533 PKMYT1-219ENST00000575981 910 ntTSL 220.66■□□□□ 0.93e-6■■■■■ 137.9
SF3B1O75533 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.65■□□□□ 0.93e-6■■■■■ 137.9
SF3B1O75533 EIF2B3-206ENST00000480675 1082 ntTSL 520.64■□□□□ 0.893e-6■■■■■ 137.9
SF3B1O75533 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.893e-6■■■■■ 137.9
SF3B1O75533 ALDH16A1-205ENST00000594549 681 ntTSL 220.58■□□□□ 0.893e-6■■■■■ 137.9
SF3B1O75533 MDK-210ENST00000490240 603 ntTSL 1 (best)20.58■□□□□ 0.893e-6■■■■■ 137.9
SF3B1O75533 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.57■□□□□ 0.882e-6■■■■■ 137.9
SF3B1O75533 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.883e-6■■■■■ 137.9
SF3B1O75533 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.883e-6■■■■■ 137.9
SF3B1O75533 TMEM94-214ENST00000580441 513 ntTSL 420.53■□□□□ 0.882e-11■■■■■ 137.9
SF3B1O75533 EPAS1-207ENST00000467888 665 ntTSL 520.53■□□□□ 0.883e-6■■■■■ 137.9
SF3B1O75533 PAFAH1B2-201ENST00000304808 821 ntTSL 1 (best)20.52■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.51■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 MFSD9-205ENST00000437075 2440 ntTSL 520.51■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 DCST1-205ENST00000525273 1895 ntTSL 220.51■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 TMEM39B-207ENST00000476968 1994 ntTSL 520.49■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.49■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 MYO1C-212ENST00000573853 583 ntTSL 320.47■□□□□ 0.873e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-217ENST00000557444 2447 ntBASIC20.44■□□□□ 0.863e-6■■■■■ 137.9
SF3B1O75533 EFR3A-206ENST00000522709 780 ntTSL 520.44■□□□□ 0.863e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1236.3 ms