Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PROM1O43490 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PROM1O43490 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PROM1O43490 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PROM1O43490 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PROM1O43490 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.68■□□□□ 0.58
PROM1O43490 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PROM1O43490 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.67■□□□□ 0.58
PROM1O43490 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PROM1O43490 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.67■□□□□ 0.58
PROM1O43490 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PROM1O43490 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.67■□□□□ 0.58
PROM1O43490 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.67■□□□□ 0.58
PROM1O43490 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.67■□□□□ 0.58
PROM1O43490 AC008403.3-201ENST00000598924 454 ntBASIC18.67■□□□□ 0.58
PROM1O43490 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.67■□□□□ 0.58
PROM1O43490 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PROM1O43490 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PROM1O43490 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PROM1O43490 TFP1-202ENST00000475455 1573 ntBASIC18.67■□□□□ 0.58
PROM1O43490 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PROM1O43490 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PROM1O43490 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
PROM1O43490 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.67■□□□□ 0.58
PROM1O43490 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.67■□□□□ 0.58
PROM1O43490 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.66■□□□□ 0.58
PROM1O43490 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PROM1O43490 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.66■□□□□ 0.58
PROM1O43490 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.66■□□□□ 0.58
PROM1O43490 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PROM1O43490 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.66■□□□□ 0.58
PROM1O43490 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PROM1O43490 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PROM1O43490 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.65■□□□□ 0.58
PROM1O43490 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PROM1O43490 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PROM1O43490 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.65■□□□□ 0.58
PROM1O43490 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.65■□□□□ 0.58
PROM1O43490 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.65■□□□□ 0.58
PROM1O43490 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.65■□□□□ 0.58
PROM1O43490 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PROM1O43490 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PROM1O43490 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PROM1O43490 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PROM1O43490 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PROM1O43490 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.65■□□□□ 0.58
PROM1O43490 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PROM1O43490 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.64■□□□□ 0.58
PROM1O43490 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PROM1O43490 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.64■□□□□ 0.58
PROM1O43490 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
PROM1O43490 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.64■□□□□ 0.58
PROM1O43490 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PROM1O43490 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PROM1O43490 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PROM1O43490 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.64■□□□□ 0.57
PROM1O43490 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.64■□□□□ 0.57
PROM1O43490 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.64■□□□□ 0.57
PROM1O43490 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PROM1O43490 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PROM1O43490 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.63■□□□□ 0.57
PROM1O43490 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PROM1O43490 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms