Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM49D1C9J1S8 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM49D1C9J1S8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 AC068338.2-201ENST00000563278 1430 ntBASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM49D1C9J1S8 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 CNN2P6-201ENST00000439038 900 ntBASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 AC034268.1-201ENST00000441047 882 ntBASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM49D1C9J1S8 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM49D1C9J1S8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 AC137761.2-201ENST00000561729 223 ntBASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 AC145350.3-201ENST00000569033 163 ntBASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 CYP2T3P-201ENST00000601990 817 ntBASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM49D1C9J1S8 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms