Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 AC092279.1-201ENST00000594934 1864 ntTSL 215.95■□□□□ 0.142e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-228ENST00000613264 3399 ntTSL 1 (best) BASIC15.82■□□□□ 0.122e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-207ENST00000468553 715 ntTSL 3 BASIC15.74■□□□□ 0.112e-6■□□□□ 11.3
U2AF1Q01081 AC092279.1-202ENST00000597683 1966 ntTSL 2 BASIC15.47■□□□□ 0.072e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-217ENST00000486249 3148 ntTSL 214.61□□□□□ -0.072e-6■□□□□ 11.3
U2AF1Q01081 C1GALT1-204ENST00000429911 802 ntTSL 514.61□□□□□ -0.074e-9■□□□□ 11.3
U2AF1Q01081 ST3GAL6-210ENST00000476833 833 ntTSL 314.18□□□□□ -0.142e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-224ENST00000495376 685 ntTSL 313.3□□□□□ -0.282e-6■□□□□ 11.3
U2AF1Q01081 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC13.08□□□□□ -0.322e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-201ENST00000265261 3362 ntTSL 2 BASIC12.44□□□□□ -0.422e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-222ENST00000492254 809 ntTSL 310.2□□□□□ -0.782e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-216ENST00000485391 767 ntTSL 39.64□□□□□ -0.872e-6■□□□□ 11.3
U2AF1Q01081 ST3GAL6-220ENST00000490684 582 ntTSL 39.41□□□□□ -0.92e-6■□□□□ 11.3
U2AF1Q01081 CCAR1-210ENST00000539250 701 ntTSL 28.72□□□□□ -1.013e-7■□□□□ 11.3
U2AF1Q01081 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC8.36□□□□□ -1.072e-6■□□□□ 11.3
U2AF1Q01081 CCAR1-216ENST00000543706 869 ntTSL 57.12□□□□□ -1.273e-7■□□□□ 11.3
U2AF1Q01081 ST3GAL6-218ENST00000486334 750 ntTSL 54.97□□□□□ -1.612e-6■□□□□ 11.3
U2AF1Q01081 SYNJ2-206ENST00000485863 810 ntTSL 324.91■■□□□ 1.589e-9■□□□□ 11.3
U2AF1Q01081 FST-202ENST00000396947 2538 ntTSL 5 BASIC23.24■■□□□ 1.319e-9■□□□□ 11.3
U2AF1Q01081 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.259e-9■□□□□ 11.3
U2AF1Q01081 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC19.01■□□□□ 0.631e-7■□□□□ 11.3
U2AF1Q01081 NPIPP1-202ENST00000534799 1214 ntTSL 3 BASIC16.41■□□□□ 0.221e-7■□□□□ 11.3
U2AF1Q01081 FST-203ENST00000491717 640 ntTSL 213.05□□□□□ -0.329e-9■□□□□ 11.3
U2AF1Q01081 NPIPP1-203ENST00000547107 1071 ntBASIC10.44□□□□□ -0.741e-7■□□□□ 11.3
U2AF1Q01081 GABRE-206ENST00000474932 430 ntTSL 53.43□□□□□ -1.862e-14■□□□□ 11.3
U2AF1Q01081 SRSF11-210ENST00000469170 668 ntTSL 225.57■■□□□ 1.689e-20■□□□□ 11.3
U2AF1Q01081 USP48-209ENST00000487880 524 ntTSL 36.95□□□□□ -1.31e-7■□□□□ 11.3
U2AF1Q01081 USP48-211ENST00000526044 549 ntTSL 35.79□□□□□ -1.481e-7■□□□□ 11.3
U2AF1Q01081 USP48-215ENST00000534705 566 ntTSL 44.45□□□□□ -1.71e-7■□□□□ 11.3
U2AF1Q01081 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC36.58■■■■□ 3.458e-7■□□□□ 11.3
U2AF1Q01081 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.338e-7■□□□□ 11.3
U2AF1Q01081 ERF-202ENST00000440177 2032 ntTSL 2 BASIC27.23■■□□□ 1.958e-7■□□□□ 11.3
U2AF1Q01081 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC26.77■■□□□ 1.881e-7■□□□□ 11.3
U2AF1Q01081 ALG9-217ENST00000619129 2020 ntTSL 225.37■■□□□ 1.651e-7■□□□□ 11.3
U2AF1Q01081 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.611e-7■□□□□ 11.3
U2AF1Q01081 ALG9-212ENST00000612489 804 ntTSL 524.8■■□□□ 1.561e-7■□□□□ 11.3
U2AF1Q01081 ALG9-216ENST00000618252 1147 ntTSL 523.67■■□□□ 1.381e-7■□□□□ 11.3
U2AF1Q01081 ALG9-213ENST00000613181 1373 ntTSL 223.36■■□□□ 1.331e-7■□□□□ 11.3
U2AF1Q01081 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 11e-7■□□□□ 11.3
U2AF1Q01081 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20.54■□□□□ 0.881e-7■□□□□ 11.3
U2AF1Q01081 ALG9-210ENST00000531154 1930 ntTSL 2 BASIC12.37□□□□□ -0.431e-7■□□□□ 11.3
U2AF1Q01081 ALG9-209ENST00000530851 692 ntTSL 511.08□□□□□ -0.641e-7■□□□□ 11.3
U2AF1Q01081 ALG9-207ENST00000527714 704 ntTSL 26.06□□□□□ -1.441e-7■□□□□ 11.3
U2AF1Q01081 SF3B2-209ENST00000530322 1163 ntTSL 522.57■■□□□ 1.28e-8■□□□□ 11.2
U2AF1Q01081 SF3B2-214ENST00000533595 1081 ntTSL 519.5■□□□□ 0.718e-8■□□□□ 11.2
U2AF1Q01081 SF3B2-203ENST00000524627 841 ntTSL 317.03■□□□□ 0.328e-8■□□□□ 11.2
U2AF1Q01081 SF3B2-201ENST00000322535 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.388e-8■□□□□ 11.2
U2AF1Q01081 SF3B2-206ENST00000528302 3254 ntTSL 5 BASIC12.61□□□□□ -0.398e-8■□□□□ 11.2
U2AF1Q01081 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.382e-6■□□□□ 11.2
U2AF1Q01081 MAN2A2-221ENST00000560451 5124 ntTSL 1 (best)25.36■■□□□ 1.652e-6■□□□□ 11.2
U2AF1Q01081 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.972e-6■□□□□ 11.2
U2AF1Q01081 MAN2A2-202ENST00000557865 2671 ntTSL 216.36■□□□□ 0.212e-6■□□□□ 11.2
U2AF1Q01081 MAN2A2-204ENST00000558161 4918 ntTSL 1 (best)15.53■□□□□ 0.082e-6■□□□□ 11.2
U2AF1Q01081 MAN2A2-201ENST00000360468 6268 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.132e-6■□□□□ 11.2
U2AF1Q01081 SLC3A2-222ENST00000546253 582 ntTSL 419.85■□□□□ 0.772e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-209ENST00000537508 583 ntTSL 212.51□□□□□ -0.412e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-223ENST00000546312 564 ntTSL 211.8□□□□□ -0.522e-23■□□□□ 11.2
U2AF1Q01081 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.255e-13■□□□□ 11.2
U2AF1Q01081 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC22.17■■□□□ 1.145e-13■□□□□ 11.2
U2AF1Q01081 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.15e-13■□□□□ 11.2
U2AF1Q01081 ENC1-206ENST00000537006 2024 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.245e-13■□□□□ 11.2
U2AF1Q01081 ENC1-204ENST00000509284 571 ntTSL 411.08□□□□□ -0.645e-13■□□□□ 11.2
U2AF1Q01081 SLC17A9-204ENST00000459704 2015 ntTSL 321.99■■□□□ 1.112e-7■□□□□ 11.2
U2AF1Q01081 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC25.3■■□□□ 1.642e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.632e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC22.65■■□□□ 1.222e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC21.67■■□□□ 1.062e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.93■□□□□ 0.942e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.92■□□□□ 0.942e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-212ENST00000538682 1368 ntTSL 1 (best)20.06■□□□□ 0.82e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-220ENST00000542922 2174 ntTSL 217.86■□□□□ 0.452e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-205ENST00000457660 873 ntTSL 516.25■□□□□ 0.192e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-217ENST00000541425 595 ntTSL 514.64□□□□□ -0.072e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-215ENST00000539891 1300 ntTSL 1 (best)14.46□□□□□ -0.092e-23■□□□□ 11.2
U2AF1Q01081 SLC3A2-207ENST00000535768 597 ntTSL 512.99□□□□□ -0.332e-23■□□□□ 11.2
U2AF1Q01081 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.475e-6■□□□□ 11.2
U2AF1Q01081 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC25.13■■□□□ 1.615e-6■□□□□ 11.2
U2AF1Q01081 HGS-207ENST00000571885 350 ntTSL 324.23■■□□□ 1.475e-6■□□□□ 11.2
U2AF1Q01081 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.185e-6■□□□□ 11.2
U2AF1Q01081 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.175e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-217ENST00000482440 306 ntTSL 322.06■■□□□ 1.125e-6■□□□□ 11.2
U2AF1Q01081 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.116e-7■□□□□ 11.2
U2AF1Q01081 NR2F1-202ENST00000502982 584 ntTSL 321.98■■□□□ 1.115e-6■□□□□ 11.2
U2AF1Q01081 HGS-204ENST00000571237 878 ntTSL 321.82■■□□□ 1.085e-6■□□□□ 11.2
U2AF1Q01081 SERINC2-204ENST00000491976 2807 ntTSL 221.55■■□□□ 1.045e-6■□□□□ 11.2
U2AF1Q01081 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC21.44■■□□□ 1.025e-6■□□□□ 11.2
U2AF1Q01081 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC21.37■■□□□ 1.015e-6■□□□□ 11.2
U2AF1Q01081 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.975e-6■□□□□ 11.2
U2AF1Q01081 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.845e-6■□□□□ 11.2
U2AF1Q01081 GGT7-204ENST00000470952 427 ntTSL 520.02■□□□□ 0.85e-6■□□□□ 11.2
U2AF1Q01081 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC19.64■□□□□ 0.745e-6■□□□□ 11.2
U2AF1Q01081 HGS-206ENST00000571647 2401 nt19.59■□□□□ 0.735e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-216ENST00000473982 551 ntTSL 419.56■□□□□ 0.725e-6■□□□□ 11.2
U2AF1Q01081 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.725e-6■□□□□ 11.2
U2AF1Q01081 NR2F1-204ENST00000512697 560 ntTSL 219.46■□□□□ 0.715e-6■□□□□ 11.2
U2AF1Q01081 ATM-212ENST00000527805 4841 ntTSL 1 (best)19.43■□□□□ 0.75e-6■□□□□ 11.2
U2AF1Q01081 GGT7-203ENST00000469018 1064 ntTSL 519.33■□□□□ 0.685e-6■□□□□ 11.2
U2AF1Q01081 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.685e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-213ENST00000453855 1035 ntTSL 418.84■□□□□ 0.615e-6■□□□□ 11.2
U2AF1Q01081 HGS-211ENST00000573949 461 ntTSL 518.01■□□□□ 0.475e-6■□□□□ 11.2
Retrieved 100 of 10,096 protein–RNA pairs in 360 ms