RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 AEBP2Q6ZN18 517 aaPredicted RBP27.26■■□□□ 1.95
USP48-209ENST00000487880 CHIC1Q5VXU3 224 aa26.83■■□□□ 1.89
USP48-209ENST00000487880 PHF23Q9BUL5 403 aaPredicted RBP23.63■■□□□ 1.37
USP48-209ENST00000487880 SENP3Q9H4L4 574 aaPredicted RBP23.06■■□□□ 1.28
USP48-209ENST00000487880 PLPPR3Q6T4P5 718 aa21.86■■□□□ 1.09
USP48-209ENST00000487880 FOXD1Q16676 465 aa21.41■■□□□ 1.02
USP48-209ENST00000487880 PPP6R1Q9UPN7 881 aa20.76■□□□□ 0.91
USP48-209ENST00000487880 ADRA2BP18089 450 aa20.73■□□□□ 0.91
USP48-209ENST00000487880 PIAS4Q8N2W9 510 aaPredicted RBP20.18■□□□□ 0.82
USP48-209ENST00000487880 MSH5O43196 834 aa20.1■□□□□ 0.81
USP48-209ENST00000487880 POTEDQ86YR6 584 aa19.62■□□□□ 0.73
USP48-209ENST00000487880 PPP4R3CPQ6ZMV5 832 aa19.28■□□□□ 0.68
USP48-209ENST00000487880 KCNA4P22459 653 aa19.11■□□□□ 0.65
USP48-209ENST00000487880 SCAF1Q9H7N4 1312 aaKnown RBP18.94■□□□□ 0.62
USP48-209ENST00000487880 NCBP3Q53F19 620 aaKnown RBP18.82■□□□□ 0.6
USP48-209ENST00000487880 MAPK8IP2Q13387 824 aaPredicted RBP18.73■□□□□ 0.59
USP48-209ENST00000487880 CNKSR2Q8WXI2 1034 aa18.7■□□□□ 0.58
USP48-209ENST00000487880 NPM3O75607 178 aaKnown RBP18.59■□□□□ 0.57
USP48-209ENST00000487880 DMRT2Q9Y5R5 561 aa18.47■□□□□ 0.55
USP48-209ENST00000487880 RNF216Q9NWF9 866 aaPredicted RBP18.3■□□□□ 0.52
USP48-209ENST00000487880 SLC4A1APQ9BWU0 796 aaKnown RBP18.22■□□□□ 0.51
USP48-209ENST00000487880 HOXD11P31277 338 aaPredicted RBP18.19■□□□□ 0.5
USP48-209ENST00000487880 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
USP48-209ENST00000487880 EHMT2Q96KQ7 1210 aa17.92■□□□□ 0.46
USP48-209ENST00000487880 CSRNP3Q8WYN3 585 aa17.68■□□□□ 0.42
USP48-209ENST00000487880 ZBTB22O15209 634 aa17.63■□□□□ 0.41
USP48-209ENST00000487880 DCAF8L1A6NGE4 600 aa17.52■□□□□ 0.4
USP48-209ENST00000487880 SLC4A2P04920 1241 aa17.52■□□□□ 0.4
USP48-209ENST00000487880 FOXD4L1Q9NU39 408 aa17.52■□□□□ 0.4
USP48-209ENST00000487880 CACNB1Q02641 598 aaPredicted RBP17.25■□□□□ 0.35
USP48-209ENST00000487880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.24■□□□□ 0.352e-9■□□□□ 9.2
USP48-209ENST00000487880 MYCNP04198 464 aaPredicted RBP17.16■□□□□ 0.34
USP48-209ENST00000487880 RNF39Q9H2S5 420 aa17.12■□□□□ 0.33
USP48-209ENST00000487880 U3KPZ7 1027 aaPredicted RBP17.06■□□□□ 0.32
USP48-209ENST00000487880 ATXN8OSP0DMR3 200 aa16.92■□□□□ 0.3
USP48-209ENST00000487880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.88■□□□□ 0.29
USP48-209ENST00000487880 C1QBPQ07021 282 aaKnown RBP16.88■□□□□ 0.29
USP48-209ENST00000487880 HNRNPUL2Q1KMD3 747 aaKnown RBP16.88■□□□□ 0.29
USP48-209ENST00000487880 SAMD1Q6SPF0 538 aaPredicted RBP16.84■□□□□ 0.29
USP48-209ENST00000487880 ATF5Q9Y2D1 282 aaPredicted RBP16.7■□□□□ 0.26
USP48-209ENST00000487880 APLP2Q06481 763 aa16.63■□□□□ 0.25
USP48-209ENST00000487880 SPINK5Q9NQ38 1064 aaPredicted RBP16.49■□□□□ 0.23
USP48-209ENST00000487880 ZNF219Q9P2Y4 722 aaPredicted RBP16.4■□□□□ 0.22
USP48-209ENST00000487880 CAPN15O75808 1086 aa16.35■□□□□ 0.21
USP48-209ENST00000487880 TRHP20396 242 aaPredicted RBP16.33■□□□□ 0.2
USP48-209ENST00000487880 POLA2Q14181 598 aa16.15■□□□□ 0.18
USP48-209ENST00000487880 DSG3P32926 999 aa16.1■□□□□ 0.17
USP48-209ENST00000487880 ABCB7O75027 752 aa16.08■□□□□ 0.16
USP48-209ENST00000487880 MKRN4PQ13434 485 aaPredicted RBP16.01■□□□□ 0.15
USP48-209ENST00000487880 FBLN2P98095 1184 aa15.93■□□□□ 0.14
USP48-209ENST00000487880 ZBTB12Q9Y330 459 aaPredicted RBP15.93■□□□□ 0.14
USP48-209ENST00000487880 FKBP8Q14318 412 aa15.92■□□□□ 0.14
USP48-209ENST00000487880 SPDYE4A6NLX3 237 aa15.7■□□□□ 0.1
USP48-209ENST00000487880 OSCARQ8IYS5 282 aa15.62■□□□□ 0.09
USP48-209ENST00000487880 PROM2Q8N271 834 aa15.59■□□□□ 0.09
USP48-209ENST00000487880 SPDYE2BA6NHP3 402 aa15.53■□□□□ 0.08
USP48-209ENST00000487880 SPDYE6P0CI01 402 aa15.53■□□□□ 0.08
USP48-209ENST00000487880 SPDYE2Q495Y8 402 aa15.53■□□□□ 0.08
USP48-209ENST00000487880 SSUH2Q9Y2M2 353 aa15.47■□□□□ 0.07
USP48-209ENST00000487880 ZNF692Q9BU19 519 aaPredicted RBP15.46■□□□□ 0.07
USP48-209ENST00000487880 POTEHQ6S545 545 aa15.38■□□□□ 0.05
USP48-209ENST00000487880 RBM42Q9BTD8 480 aaKnown RBP15.34■□□□□ 0.05
USP48-209ENST00000487880 FBXO3Q9UK99 471 aa15.3■□□□□ 0.04
USP48-209ENST00000487880 PABPN1Q86U42 306 aaKnown RBP eCLIP15.28■□□□□ 0.04
USP48-209ENST00000487880 AKT1S1Q96B36 256 aa15.19■□□□□ 0.02
USP48-209ENST00000487880 VASPP50552 380 aaPredicted RBP15.11■□□□□ 0.01
USP48-209ENST00000487880 STAG3Q9UJ98 1225 aa15.07■□□□□ 0
USP48-209ENST00000487880 REM2Q8IYK8 340 aaPredicted RBP15.04■□□□□ -0
USP48-209ENST00000487880 SPDYE1Q8NFV5 336 aaPredicted RBP14.99□□□□□ -0.01
USP48-209ENST00000487880 CHRDL2Q6WN34 429 aa14.98□□□□□ -0.01
USP48-209ENST00000487880 AMER1Q5JTC6 1135 aaPredicted RBP14.93□□□□□ -0.02
USP48-209ENST00000487880 IFNLR1Q8IU57 520 aaPredicted RBP14.93□□□□□ -0.02
USP48-209ENST00000487880 RTN4Q9NQC3 1192 aaKnown RBP14.91□□□□□ -0.02
USP48-209ENST00000487880 PITPNM1O00562 1244 aa14.87□□□□□ -0.03
USP48-209ENST00000487880 CLEC11AQ9Y240 323 aa14.85□□□□□ -0.03
USP48-209ENST00000487880 MIER1Q8N108 512 aa14.82□□□□□ -0.04
USP48-209ENST00000487880 PLCD3Q8N3E9 789 aa14.82□□□□□ -0.04
USP48-209ENST00000487880 PRR29P0C7W0 189 aa14.78□□□□□ -0.04
USP48-209ENST00000487880 PLEKHG5O94827 1062 aa14.71□□□□□ -0.05
USP48-209ENST00000487880 KLHL34Q8N239 644 aa14.71□□□□□ -0.05
USP48-209ENST00000487880 CREBZFQ9NS37 354 aa14.71□□□□□ -0.05
USP48-209ENST00000487880 SPOCK2Q92563 424 aa14.69□□□□□ -0.06
USP48-209ENST00000487880 ZBTB47Q9UFB7 747 aaPredicted RBP14.68□□□□□ -0.06
USP48-209ENST00000487880 MNX1P50219 401 aaPredicted RBP14.62□□□□□ -0.07
USP48-209ENST00000487880 PIP4P2Q8N4L2 257 aa14.6□□□□□ -0.07
USP48-209ENST00000487880 FXR2P51116 673 aaKnown RBP eCLIP14.56□□□□□ -0.08
USP48-209ENST00000487880 PKD2Q13563 968 aa14.54□□□□□ -0.08
USP48-209ENST00000487880 NUBP1P53384 320 aa14.5□□□□□ -0.09
USP48-209ENST00000487880 CHADLQ6NUI6 762 aa14.5□□□□□ -0.09
USP48-209ENST00000487880 PRKAR2AP13861 404 aaKnown RBP14.46□□□□□ -0.09
USP48-209ENST00000487880 NPM1P06748 294 aaKnown RBP eCLIP14.42□□□□□ -0.1
USP48-209ENST00000487880 SP7Q8TDD2 431 aaPredicted RBP14.42□□□□□ -0.1
USP48-209ENST00000487880 FARP1Q9Y4F1 1045 aaPredicted RBP14.42□□□□□ -0.1
USP48-209ENST00000487880 RASEFQ8IZ41 740 aa14.37□□□□□ -0.11
USP48-209ENST00000487880 CIZ1Q9ULV3 898 aaPredicted RBP14.37□□□□□ -0.11
USP48-209ENST00000487880 HAX1O00165 279 aa14.36□□□□□ -0.11
USP48-209ENST00000487880 GSE1Q14687 1217 aa14.35□□□□□ -0.11
USP48-209ENST00000487880 ECM2O94769 699 aaPredicted RBP14.34□□□□□ -0.11
USP48-209ENST00000487880 FAM212AQ96EL1 285 aa14.33□□□□□ -0.12
USP48-209ENST00000487880 TRIM41Q8WV44 630 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms