Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C5orf56-207ENST00000621237 486 ntAPPRIS P5 TSL 2 BASIC8.56□□□□□ -1.04
COL9A1P20849 AL356585.4-201ENST00000623078 1229 ntBASIC8.56□□□□□ -1.04
COL9A1P20849 AP006248.2-201ENST00000623309 592 ntBASIC8.56□□□□□ -1.04
COL9A1P20849 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 LINC01002-216ENST00000632351 572 ntTSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 KCNK10-203ENST00000340700 7501 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 PARP9-205ENST00000477522 3128 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 LRTOMT-203ENST00000324866 2402 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 KBTBD4-204ENST00000526005 2444 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 MAP3K7CL-201ENST00000286791 1725 ntTSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 MAPK10-260ENST00000641047 2546 ntBASIC8.56□□□□□ -1.04
COL9A1P20849 AC074198.1-201ENST00000506546 1397 ntBASIC8.56□□□□□ -1.04
COL9A1P20849 SLC24A2-201ENST00000286344 2170 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 ZFP2-205ENST00000523286 2154 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 MAPK10-325ENST00000641537 2623 ntBASIC8.56□□□□□ -1.04
COL9A1P20849 TBC1D3P1-DHX40P1-201ENST00000587125 1841 ntTSL 2 BASIC8.56□□□□□ -1.04
COL9A1P20849 SNTG1-207ENST00000522124 3504 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 SNHG14-210ENST00000546682 8842 ntTSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 AC113189.6-201ENST00000636696 3591 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 TCF4-224ENST00000564403 2696 ntAPPRIS ALT1 TSL 5 BASIC8.56□□□□□ -1.04
COL9A1P20849 CTNNA2-203ENST00000402739 3684 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 THBS3-210ENST00000541576 3200 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 CDH7-202ENST00000397968 12231 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 FAM172A-201ENST00000395965 4312 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
COL9A1P20849 AC051619.3-201ENST00000560646 2426 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 CTDSPL2-201ENST00000260327 6828 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 GIT2-205ENST00000457474 5291 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 TRIM48-201ENST00000417545 1445 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 EGF-206ENST00000509793 4489 ntTSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 CALCOCO2-215ENST00000509507 1512 ntTSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 EXOC6-204ENST00000443748 3310 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 CTNNA1-243ENST00000540387 2684 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 IREB2-208ENST00000560440 4396 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 ZNF619-210ENST00000522736 2030 ntTSL 5 BASIC8.55□□□□□ -1.04
COL9A1P20849 ZNF702P-201ENST00000270443 2990 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 GINS4-201ENST00000276533 3841 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 U8.3-201ENST00000363321 132 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 PDHA1-202ENST00000379804 709 ntTSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 MIR1302-3-201ENST00000408128 138 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 Y_RNA.608-201ENST00000410647 95 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC8.55□□□□□ -1.04
COL9A1P20849 RPSAP1-201ENST00000421328 880 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 ISCA1P6-201ENST00000427740 390 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 AC133104.1-201ENST00000429100 218 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC8.55□□□□□ -1.04
COL9A1P20849 AC009229.1-201ENST00000450854 622 ntTSL 4 BASIC8.55□□□□□ -1.04
COL9A1P20849 DNAJB5P1-201ENST00000454004 806 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC8.55□□□□□ -1.04
COL9A1P20849 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC8.55□□□□□ -1.04
COL9A1P20849 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 AC010368.1-201ENST00000510160 456 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 RNU6-1271P-201ENST00000517049 105 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC8.55□□□□□ -1.04
COL9A1P20849 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC8.55□□□□□ -1.04
COL9A1P20849 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC8.55□□□□□ -1.04
COL9A1P20849 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC8.55□□□□□ -1.04
COL9A1P20849 AL049869.4-201ENST00000555669 178 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 AC133565.1-201ENST00000569218 488 ntTSL 3 BASIC8.55□□□□□ -1.04
COL9A1P20849 RPS11-203ENST00000596873 583 ntTSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 MIR6778-201ENST00000617912 73 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 IARS2P1-201ENST00000508226 3173 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 HLA-DOA-201ENST00000229829 3489 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
COL9A1P20849 SEMA4D-202ENST00000356444 4503 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
COL9A1P20849 RAE1-202ENST00000395840 2602 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 LINC00607-205ENST00000445174 3690 ntTSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
COL9A1P20849 AL391988.1-201ENST00000614747 1553 ntBASIC8.55□□□□□ -1.04
COL9A1P20849 GSDMC-201ENST00000276708 2714 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 CCL22-201ENST00000219235 2929 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 CPB1-208ENST00000491148 1773 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
COL9A1P20849 ZNF30-204ENST00000601142 2280 ntAPPRIS ALT2 TSL 2 BASIC8.55□□□□□ -1.04
COL9A1P20849 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 CCDC80-202ENST00000439685 3557 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
COL9A1P20849 DTNA-209ENST00000556414 1626 ntTSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 PEX5L-209ENST00000468741 2309 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 CASK-204ENST00000378166 3123 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 SMC1B-202ENST00000404354 3636 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 CLVS2-201ENST00000275162 11485 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 RBFOX1-223ENST00000620507 4018 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 NTNG2-201ENST00000372179 3984 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 CDH8-211ENST00000584337 3986 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 BBS9-202ENST00000350941 3899 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 ARHGEF9-237ENST00000638021 3876 ntTSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 COL12A1-207ENST00000483888 9637 ntAPPRIS ALT1 TSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 CPEB1-207ENST00000611031 3074 ntAPPRIS ALT1 TSL 5 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC009163.7-201ENST00000621929 2557 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 LINC01572-201ENST00000561611 2194 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
COL9A1P20849 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC8.54□□□□□ -1.04
COL9A1P20849 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC8.54□□□□□ -1.04
COL9A1P20849 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
COL9A1P20849 OR4A15-201ENST00000314706 1035 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 AC005294.1-201ENST00000355509 281 ntBASIC8.54□□□□□ -1.04
COL9A1P20849 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms