RNA–Protein interactions for RNA: ENST00000564403.6

TCF4-224, Transcript of transcription factor 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene TCF4, Length 2,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-224ENST00000564403 NISCHQ9Y2I1 1504 aa19.22■□□□□ 0.67
TCF4-224ENST00000564403 CCDC180Q9P1Z9 1646 aa16.37■□□□□ 0.21
TCF4-224ENST00000564403 SHROOM4Q9ULL8 1493 aa16.34■□□□□ 0.21
TCF4-224ENST00000564403 DCAF8L2P0C7V8 631 aa16.27■□□□□ 0.2
TCF4-224ENST00000564403 SLC24A1O60721 1099 aa16.22■□□□□ 0.19
TCF4-224ENST00000564403 PELP1Q8IZL8 1130 aaKnown RBP16.19■□□□□ 0.18
TCF4-224ENST00000564403 MYT1Q01538 1121 aa16.17■□□□□ 0.18
TCF4-224ENST00000564403 ZCCHC6Q5VYS8 1495 aaKnown RBP16.16■□□□□ 0.18
TCF4-224ENST00000564403 SUPT5HO00267 1087 aaKnown RBP15.87■□□□□ 0.13
TCF4-224ENST00000564403 TTBK1Q5TCY1 1321 aaPredicted RBP15.8■□□□□ 0.12
TCF4-224ENST00000564403 ABCC9O60706 1549 aa15.67■□□□□ 0.1
TCF4-224ENST00000564403 DCAF1Q9Y4B6 1507 aa15.67■□□□□ 0.1
TCF4-224ENST00000564403 PRKCSHP14314 528 aaPredicted RBP15.66■□□□□ 0.1
TCF4-224ENST00000564403 SCRIBQ14160 1630 aa15.45■□□□□ 0.06
TCF4-224ENST00000564403 APLP2Q06481 763 aa15.38■□□□□ 0.05
TCF4-224ENST00000564403 MYO15BQ96JP2 1530 aa15.33■□□□□ 0.04
TCF4-224ENST00000564403 ERICH6Q7L0X2 663 aa15.31■□□□□ 0.04
TCF4-224ENST00000564403 NACADO15069 1562 aa15.27■□□□□ 0.03
TCF4-224ENST00000564403 DAXXQ9UER7 740 aaPredicted RBP15.2■□□□□ 0.02
TCF4-224ENST00000564403 CHIC1Q5VXU3 224 aa15.2■□□□□ 0.02
TCF4-224ENST00000564403 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
TCF4-224ENST00000564403 CECR2Q9BXF3 1484 aa15.11■□□□□ 0.01
TCF4-224ENST00000564403 RB1CC1Q8TDY2 1594 aa15.11■□□□□ 0.01
TCF4-224ENST00000564403 PABPN1Q86U42 306 aaKnown RBP eCLIP15.01□□□□□ -0.01
TCF4-224ENST00000564403 MROH2BQ7Z745 1585 aa14.98□□□□□ -0.01
TCF4-224ENST00000564403 UNC13AQ9UPW8 1703 aa14.88□□□□□ -0.03
TCF4-224ENST00000564403 WIZO95785 1651 aa14.86□□□□□ -0.03
TCF4-224ENST00000564403 LOC105371045A0A1W2PR82 267 aa14.83□□□□□ -0.03
TCF4-224ENST00000564403 BICRAQ9NZM4 1560 aa14.76□□□□□ -0.05
TCF4-224ENST00000564403 BAZ1AQ9NRL2 1556 aaPredicted RBP14.75□□□□□ -0.05
TCF4-224ENST00000564403 TRIM41Q8WV44 630 aa14.75□□□□□ -0.05
TCF4-224ENST00000564403 FAM9AQ8IZU1 332 aaPredicted RBP14.71□□□□□ -0.05
TCF4-224ENST00000564403 BCL11AQ9H165 835 aa14.7□□□□□ -0.06
TCF4-224ENST00000564403 SMARCA4P51532 1647 aa14.68□□□□□ -0.06
TCF4-224ENST00000564403 EHMT2Q96KQ7 1210 aa14.67□□□□□ -0.06
TCF4-224ENST00000564403 CCDC88BA6NC98 1476 aa14.57□□□□□ -0.08
TCF4-224ENST00000564403 AEBP2Q6ZN18 517 aaPredicted RBP14.56□□□□□ -0.08
TCF4-224ENST00000564403 TOP2AP11388 1531 aaKnown RBP14.55□□□□□ -0.08
TCF4-224ENST00000564403 EIF5BO60841 1220 aaKnown RBP14.51□□□□□ -0.09
TCF4-224ENST00000564403 SMARCA2P51531 1590 aa14.5□□□□□ -0.09
TCF4-224ENST00000564403 ABCC8Q09428 1581 aa14.45□□□□□ -0.1
TCF4-224ENST00000564403 PCGF6Q9BYE7 350 aa14.44□□□□□ -0.1
TCF4-224ENST00000564403 ATAD2BQ9ULI0 1458 aa14.44□□□□□ -0.1
TCF4-224ENST00000564403 EIF4G1Q04637 1599 aaKnown RBP14.43□□□□□ -0.1
TCF4-224ENST00000564403 BAZ1BQ9UIG0 1483 aaKnown RBP14.37□□□□□ -0.11
TCF4-224ENST00000564403 PEG3Q9GZU2 1588 aa14.37□□□□□ -0.11
TCF4-224ENST00000564403 NCBP3Q53F19 620 aaKnown RBP14.34□□□□□ -0.11
TCF4-224ENST00000564403 SOGA1O94964 1423 aa14.28□□□□□ -0.12
TCF4-224ENST00000564403 RUSC2Q8N2Y8 1516 aa14.25□□□□□ -0.13
TCF4-224ENST00000564403 PPARGC1BQ86YN6 1023 aaKnown RBP14.24□□□□□ -0.13
TCF4-224ENST00000564403 WRNQ14191 1432 aaPredicted RBP eCLIP14.21□□□□□ -0.13
TCF4-224ENST00000564403 PLEKHG5O94827 1062 aa14.2□□□□□ -0.14
TCF4-224ENST00000564403 NCAPD3P42695 1498 aa14.19□□□□□ -0.14
TCF4-224ENST00000564403 PLPPR3Q6T4P5 718 aa14.16□□□□□ -0.14
TCF4-224ENST00000564403 CSRNP3Q8WYN3 585 aa14.15□□□□□ -0.14
TCF4-224ENST00000564403 SYNJ1O43426 1573 aa14.15□□□□□ -0.15
TCF4-224ENST00000564403 TRIM26Q12899 539 aaPredicted RBP14.14□□□□□ -0.15
TCF4-224ENST00000564403 UBTFP17480 764 aaKnown RBP14.11□□□□□ -0.15
TCF4-224ENST00000564403 HRCP23327 699 aa14.11□□□□□ -0.15
TCF4-224ENST00000564403 HMGXB3Q12766 1538 aa14.09□□□□□ -0.15
TCF4-224ENST00000564403 RTN4Q9NQC3 1192 aaKnown RBP14.07□□□□□ -0.16
TCF4-224ENST00000564403 SCAF1Q9H7N4 1312 aaKnown RBP14.05□□□□□ -0.16
TCF4-224ENST00000564403 RANGAP1P46060 587 aaPredicted RBP14.04□□□□□ -0.16
TCF4-224ENST00000564403 CC2D2AQ9P2K1 1620 aa14.04□□□□□ -0.16
TCF4-224ENST00000564403 DNAJC5BQ9UF47 199 aa14.01□□□□□ -0.17
TCF4-224ENST00000564403 CEP162Q5TB80 1403 aa14□□□□□ -0.17
TCF4-224ENST00000564403 CFTRP13569 1480 aa13.99□□□□□ -0.17
TCF4-224ENST00000564403 EEA1Q15075 1411 aa13.98□□□□□ -0.17
TCF4-224ENST00000564403 ARXQ96QS3 562 aa13.97□□□□□ -0.17
TCF4-224ENST00000564403 TNIKQ9UKE5 1360 aa13.97□□□□□ -0.17
TCF4-224ENST00000564403 TOP2BQ02880 1626 aa13.95□□□□□ -0.18
TCF4-224ENST00000564403 CUX1P39880 1505 aa13.94□□□□□ -0.18
TCF4-224ENST00000564403 CADPSQ9ULU8 1353 aa13.93□□□□□ -0.18
TCF4-224ENST00000564403 GOLGA3Q08378 1498 aa13.93□□□□□ -0.18
TCF4-224ENST00000564403 RAPGEF2Q9Y4G8 1499 aa13.91□□□□□ -0.18
TCF4-224ENST00000564403 KLHL34Q8N239 644 aa13.9□□□□□ -0.18
TCF4-224ENST00000564403 CEP164Q9UPV0 1460 aa13.88□□□□□ -0.19
TCF4-224ENST00000564403 NESP48681 1621 aa13.87□□□□□ -0.19
TCF4-224ENST00000564403 TIMELESSQ9UNS1 1208 aa13.87□□□□□ -0.19
TCF4-224ENST00000564403 BIVM-ERCC5R4GMW8 1640 aa13.86□□□□□ -0.19
TCF4-224ENST00000564403 PODXL2Q9NZ53 605 aa13.86□□□□□ -0.19
TCF4-224ENST00000564403 CENPBP07199 599 aaPredicted RBP13.81□□□□□ -0.2
TCF4-224ENST00000564403 CLIP1P30622 1438 aa13.81□□□□□ -0.2
TCF4-224ENST00000564403 KIF21BO75037 1637 aa13.81□□□□□ -0.2
TCF4-224ENST00000564403 FANCD2Q9BXW9 1451 aa13.79□□□□□ -0.2
TCF4-224ENST00000564403 KIF27Q86VH2 1401 aa13.78□□□□□ -0.2
TCF4-224ENST00000564403 UBE2Q2Q8WVN8 375 aa13.77□□□□□ -0.21
TCF4-224ENST00000564403 CUX2O14529 1486 aa13.76□□□□□ -0.21
TCF4-224ENST00000564403 PRXQ9BXM0 1461 aa13.76□□□□□ -0.21
TCF4-224ENST00000564403 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.76□□□□□ -0.21
TCF4-224ENST00000564403 FGD5Q6ZNL6 1462 aa13.75□□□□□ -0.21
TCF4-224ENST00000564403 IGF1RP08069 1367 aa13.73□□□□□ -0.21
TCF4-224ENST00000564403 RAD54L2Q9Y4B4 1467 aa13.72□□□□□ -0.21
TCF4-224ENST00000564403 PRDM2Q13029 1718 aa13.71□□□□□ -0.21
TCF4-224ENST00000564403 VPS8Q8N3P4 1428 aa13.67□□□□□ -0.22
TCF4-224ENST00000564403 ERICH3Q5RHP9 1530 aa13.65□□□□□ -0.22
TCF4-224ENST00000564403 TOPBP1Q92547 1522 aa13.65□□□□□ -0.22
TCF4-224ENST00000564403 CARMIL1Q5VZK9 1371 aa13.64□□□□□ -0.23
TCF4-224ENST00000564403 CCER1Q8TC90 406 aaPredicted RBP13.64□□□□□ -0.23
TCF4-224ENST00000564403 POLA1P09884 1462 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 185.8 ms