RNA–Protein interactions for RNA: ENST00000404354.3

SMC1B-202, Transcript of structural maintenance of chromosomes 1B, humanhuman

TSL 1 (best) BASIC

Gene SMC1B, Length 3,636 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1B-202ENST00000404354 NISCHQ9Y2I1 1504 aa18.18■□□□□ 0.5
SMC1B-202ENST00000404354 SHROOM4Q9ULL8 1493 aa16.6■□□□□ 0.25
SMC1B-202ENST00000404354 SUPT5HO00267 1087 aaKnown RBP16.49■□□□□ 0.23
SMC1B-202ENST00000404354 PCGF6Q9BYE7 350 aa16.09■□□□□ 0.17
SMC1B-202ENST00000404354 PPARGC1BQ86YN6 1023 aaKnown RBP16.06■□□□□ 0.16
SMC1B-202ENST00000404354 HRCP23327 699 aa16.04■□□□□ 0.16
SMC1B-202ENST00000404354 DCAF8L2P0C7V8 631 aa15.96■□□□□ 0.15
SMC1B-202ENST00000404354 MYO15BQ96JP2 1530 aa15.87■□□□□ 0.13
SMC1B-202ENST00000404354 CHIC1Q5VXU3 224 aa15.87■□□□□ 0.13
SMC1B-202ENST00000404354 LOC105371045A0A1W2PR82 267 aa15.74■□□□□ 0.11
SMC1B-202ENST00000404354 EHMT2Q96KQ7 1210 aa15.51■□□□□ 0.07
SMC1B-202ENST00000404354 ZCCHC6Q5VYS8 1495 aaKnown RBP15.37■□□□□ 0.05
SMC1B-202ENST00000404354 FAM9AQ8IZU1 332 aaPredicted RBP15.36■□□□□ 0.05
SMC1B-202ENST00000404354 TRIM26Q12899 539 aaPredicted RBP15.34■□□□□ 0.05
SMC1B-202ENST00000404354 CCDC180Q9P1Z9 1646 aa15.28■□□□□ 0.04
SMC1B-202ENST00000404354 DCAF1Q9Y4B6 1507 aa15.21■□□□□ 0.02
SMC1B-202ENST00000404354 SCAF1Q9H7N4 1312 aaKnown RBP15.19■□□□□ 0.02
SMC1B-202ENST00000404354 TRIM41Q8WV44 630 aa15.09■□□□□ 0.01
SMC1B-202ENST00000404354 TTBK1Q5TCY1 1321 aaPredicted RBP15.05■□□□□ -0
SMC1B-202ENST00000404354 ZEB1P37275 1124 aaPredicted RBP15.02□□□□□ -0.01
SMC1B-202ENST00000404354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.99□□□□□ -0.01
SMC1B-202ENST00000404354 PELP1Q8IZL8 1130 aaKnown RBP14.97□□□□□ -0.01
SMC1B-202ENST00000404354 CCER1Q8TC90 406 aaPredicted RBP14.89□□□□□ -0.03
SMC1B-202ENST00000404354 NEUROD1Q13562 356 aa14.89□□□□□ -0.03
SMC1B-202ENST00000404354 GTF3C3Q9Y5Q9 886 aa14.81□□□□□ -0.04
SMC1B-202ENST00000404354 ACIN1Q9UKV3 1341 aaKnown RBP14.79□□□□□ -0.04
SMC1B-202ENST00000404354 YTHDC1Q96MU7 727 aaKnown RBP14.75□□□□□ -0.05
SMC1B-202ENST00000404354 DIEXFQ68CQ4 756 aaKnown RBP14.73□□□□□ -0.05
SMC1B-202ENST00000404354 RSF1Q96T23 1441 aaPredicted RBP14.7□□□□□ -0.06
SMC1B-202ENST00000404354 CENPBP07199 599 aaPredicted RBP14.63□□□□□ -0.07
SMC1B-202ENST00000404354 RB1CC1Q8TDY2 1594 aa14.62□□□□□ -0.07
SMC1B-202ENST00000404354 SCRIBQ14160 1630 aa14.62□□□□□ -0.07
SMC1B-202ENST00000404354 ABCC9O60706 1549 aa14.54□□□□□ -0.08
SMC1B-202ENST00000404354 HNRNPUL2Q1KMD3 747 aaKnown RBP14.46□□□□□ -0.1
SMC1B-202ENST00000404354 CECR2Q9BXF3 1484 aa14.45□□□□□ -0.1
SMC1B-202ENST00000404354 RANGAP1P46060 587 aaPredicted RBP14.44□□□□□ -0.1
SMC1B-202ENST00000404354 UBTFP17480 764 aaKnown RBP14.43□□□□□ -0.1
SMC1B-202ENST00000404354 MIER1Q8N108 512 aa14.42□□□□□ -0.1
SMC1B-202ENST00000404354 ZNF316A6NFI3 1004 aaPredicted RBP14.4□□□□□ -0.1
SMC1B-202ENST00000404354 MROH2BQ7Z745 1585 aa14.32□□□□□ -0.12
SMC1B-202ENST00000404354 WIZO95785 1651 aa14.26□□□□□ -0.13
SMC1B-202ENST00000404354 CEP162Q5TB80 1403 aa14.25□□□□□ -0.13
SMC1B-202ENST00000404354 ABCC8Q09428 1581 aa14.24□□□□□ -0.13
SMC1B-202ENST00000404354 SOGA1O94964 1423 aa14.24□□□□□ -0.13
SMC1B-202ENST00000404354 CCDC88BA6NC98 1476 aa14.23□□□□□ -0.13
SMC1B-202ENST00000404354 MYT1Q01538 1121 aa14.22□□□□□ -0.13
SMC1B-202ENST00000404354 NACADO15069 1562 aa14.19□□□□□ -0.14
SMC1B-202ENST00000404354 CSRNP3Q8WYN3 585 aa14.19□□□□□ -0.14
SMC1B-202ENST00000404354 RUSC2Q8N2Y8 1516 aa14.17□□□□□ -0.14
SMC1B-202ENST00000404354 APLP2Q06481 763 aa14.11□□□□□ -0.15
SMC1B-202ENST00000404354 BCANQ96GW7 911 aa14.08□□□□□ -0.16
SMC1B-202ENST00000404354 TNIKQ9UKE5 1360 aa14.06□□□□□ -0.16
SMC1B-202ENST00000404354 WRNQ14191 1432 aaPredicted RBP eCLIP14.05□□□□□ -0.16
SMC1B-202ENST00000404354 ITGAEP38570 1179 aa14.05□□□□□ -0.16
SMC1B-202ENST00000404354 SUPT16HQ9Y5B9 1047 aaKnown RBP14.03□□□□□ -0.16
SMC1B-202ENST00000404354 UNC13AQ9UPW8 1703 aa14.01□□□□□ -0.17
SMC1B-202ENST00000404354 KCNH8Q96L42 1107 aa14□□□□□ -0.17
SMC1B-202ENST00000404354 PABPN1Q86U42 306 aaKnown RBP eCLIP13.98□□□□□ -0.17
SMC1B-202ENST00000404354 BAZ1AQ9NRL2 1556 aaPredicted RBP13.93□□□□□ -0.18
SMC1B-202ENST00000404354 TSHZ2Q9NRE2 1034 aa13.92□□□□□ -0.18
SMC1B-202ENST00000404354 CLIP1P30622 1438 aa13.92□□□□□ -0.18
SMC1B-202ENST00000404354 GOLGA3Q08378 1498 aa13.91□□□□□ -0.18
SMC1B-202ENST00000404354 EIF4G1Q04637 1599 aaKnown RBP13.89□□□□□ -0.19
SMC1B-202ENST00000404354 HIRIP3Q9BW71 556 aaPredicted RBP13.87□□□□□ -0.19
SMC1B-202ENST00000404354 KANK4Q5T7N3 995 aaPredicted RBP13.86□□□□□ -0.19
SMC1B-202ENST00000404354 BICRAQ9NZM4 1560 aa13.85□□□□□ -0.19
SMC1B-202ENST00000404354 FKBP8Q14318 412 aa13.83□□□□□ -0.19
SMC1B-202ENST00000404354 SMARCA2P51531 1590 aa13.83□□□□□ -0.2
SMC1B-202ENST00000404354 TOP2AP11388 1531 aaKnown RBP13.81□□□□□ -0.2
SMC1B-202ENST00000404354 DDX10Q13206 875 aaKnown RBP13.81□□□□□ -0.2
SMC1B-202ENST00000404354 ANP32EQ9BTT0 268 aa13.8□□□□□ -0.2
SMC1B-202ENST00000404354 DHX57Q6P158 1386 aaKnown RBP13.8□□□□□ -0.2
SMC1B-202ENST00000404354 RAPGEF2Q9Y4G8 1499 aa13.78□□□□□ -0.2
SMC1B-202ENST00000404354 EEA1Q15075 1411 aa13.78□□□□□ -0.2
SMC1B-202ENST00000404354 VPS8Q8N3P4 1428 aa13.78□□□□□ -0.2
SMC1B-202ENST00000404354 TRIM52Q96A61 297 aa13.78□□□□□ -0.2
SMC1B-202ENST00000404354 CEP164Q9UPV0 1460 aa13.75□□□□□ -0.21
SMC1B-202ENST00000404354 SMARCA4P51532 1647 aa13.72□□□□□ -0.21
SMC1B-202ENST00000404354 SIN3AQ96ST3 1273 aa13.72□□□□□ -0.21
SMC1B-202ENST00000404354 BCL11AQ9H165 835 aa13.72□□□□□ -0.21
SMC1B-202ENST00000404354 ATP1B4Q9UN42 357 aaPredicted RBP13.72□□□□□ -0.21
SMC1B-202ENST00000404354 SYNJ1O43426 1573 aa13.68□□□□□ -0.22
SMC1B-202ENST00000404354 IRX6P78412 446 aaPredicted RBP13.68□□□□□ -0.22
SMC1B-202ENST00000404354 NEFLP07196 543 aa13.65□□□□□ -0.22
SMC1B-202ENST00000404354 KIF21BO75037 1637 aa13.65□□□□□ -0.22
SMC1B-202ENST00000404354 FAM50AQ14320 339 aaKnown RBP13.65□□□□□ -0.22
SMC1B-202ENST00000404354 RBM19Q9Y4C8 960 aaKnown RBP13.64□□□□□ -0.23
SMC1B-202ENST00000404354 CLSPNQ9HAW4 1339 aa13.63□□□□□ -0.23
SMC1B-202ENST00000404354 P3H3Q8IVL6 736 aa13.62□□□□□ -0.23
SMC1B-202ENST00000404354 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
SMC1B-202ENST00000404354 CCNB3Q8WWL7 1395 aa13.55□□□□□ -0.24
SMC1B-202ENST00000404354 ARAP1Q96P48 1450 aa13.54□□□□□ -0.24
SMC1B-202ENST00000404354 ANP32CO43423 234 aa13.52□□□□□ -0.24
SMC1B-202ENST00000404354 CNGB1Q14028 1251 aaPredicted RBP13.52□□□□□ -0.25
SMC1B-202ENST00000404354 MSH5O43196 834 aa13.51□□□□□ -0.25
SMC1B-202ENST00000404354 BAZ1BQ9UIG0 1483 aaKnown RBP13.49□□□□□ -0.25
SMC1B-202ENST00000404354 HNRNPUQ00839 825 aaKnown RBP eCLIP13.48□□□□□ -0.25
SMC1B-202ENST00000404354 ERICH6Q7L0X2 663 aa13.48□□□□□ -0.25
SMC1B-202ENST00000404354 SENP3-EIF4A1A0A087X0R7 540 aa13.46□□□□□ -0.25
SMC1B-202ENST00000404354 PPP1R15AO75807 674 aaPredicted RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms