RNA–Protein interactions for RNA: ENST00000620507.4

RBFOX1-223, Transcript of RNA binding fox-1 homolog 1, human

TSL 5 BASIC

Gene RBFOX1, Length 4,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBFOX1-223	ENST00000620507	NISCH	Q9Y2I1	1504 aa		18.14	■□□□□ 0.49
RBFOX1-223	ENST00000620507	DCAF8L2	P0C7V8	631 aa		16.2	■□□□□ 0.18
RBFOX1-223	ENST00000620507	SHROOM4	Q9ULL8	1493 aa		16.04	■□□□□ 0.16
RBFOX1-223	ENST00000620507	SUPT5H	O00267	1087 aa	Known RBP	15.91	■□□□□ 0.14
RBFOX1-223	ENST00000620507	CCDC180	Q9P1Z9	1646 aa		15.23	■□□□□ 0.03
RBFOX1-223	ENST00000620507	ZCCHC6	Q5VYS8	1495 aa	Known RBP	15.22	■□□□□ 0.03
RBFOX1-223	ENST00000620507	CHIC1	Q5VXU3	224 aa		15	□□□□□ -0.01
RBFOX1-223	ENST00000620507	PCGF6	Q9BYE7	350 aa		14.82	□□□□□ -0.04
RBFOX1-223	ENST00000620507	EHMT2	Q96KQ7	1210 aa		14.81	□□□□□ -0.04
RBFOX1-223	ENST00000620507	TRIM41	Q8WV44	630 aa		14.8	□□□□□ -0.04
RBFOX1-223	ENST00000620507	FAM9A	Q8IZU1	332 aa	Predicted RBP	14.79	□□□□□ -0.04
RBFOX1-223	ENST00000620507	ABCC9	O60706	1549 aa		14.77	□□□□□ -0.04
RBFOX1-223	ENST00000620507	DCAF1	Q9Y4B6	1507 aa		14.69	□□□□□ -0.06
RBFOX1-223	ENST00000620507	LOC105371045	A0A1W2PR82	267 aa		14.69	□□□□□ -0.06
RBFOX1-223	ENST00000620507	SCRIB	Q14160	1630 aa		14.61	□□□□□ -0.07
RBFOX1-223	ENST00000620507	HRC	P23327	699 aa		14.5	□□□□□ -0.09
RBFOX1-223	ENST00000620507	MYO15B	Q96JP2	1530 aa		14.48	□□□□□ -0.09
RBFOX1-223	ENST00000620507	TRIM26	Q12899	539 aa	Predicted RBP	14.44	□□□□□ -0.1
RBFOX1-223	ENST00000620507	RSF1	Q96T23	1441 aa	Predicted RBP	14.41	□□□□□ -0.1
RBFOX1-223	ENST00000620507	NACAD	O15069	1562 aa		14.35	□□□□□ -0.11
RBFOX1-223	ENST00000620507	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.32	□□□□□ -0.12
RBFOX1-223	ENST00000620507	TTBK1	Q5TCY1	1321 aa	Predicted RBP	14.3	□□□□□ -0.12
RBFOX1-223	ENST00000620507	ZEB1	P37275	1124 aa	Predicted RBP	14.29	□□□□□ -0.12
RBFOX1-223	ENST00000620507	PPARGC1B	Q86YN6	1023 aa	Known RBP	14.28	□□□□□ -0.12
RBFOX1-223	ENST00000620507	UBTF	P17480	764 aa	Known RBP	14.27	□□□□□ -0.12
RBFOX1-223	ENST00000620507	RB1CC1	Q8TDY2	1594 aa		14.23	□□□□□ -0.13
RBFOX1-223	ENST00000620507	CECR2	Q9BXF3	1484 aa		14.2	□□□□□ -0.14
RBFOX1-223	ENST00000620507	APLP2	Q06481	763 aa		14.19	□□□□□ -0.14
RBFOX1-223	ENST00000620507	CCER1	Q8TC90	406 aa	Predicted RBP	14.14	□□□□□ -0.15
RBFOX1-223	ENST00000620507	RANGAP1	P46060	587 aa	Predicted RBP	14.13	□□□□□ -0.15
RBFOX1-223	ENST00000620507	MROH2B	Q7Z745	1585 aa		14.09	□□□□□ -0.15
RBFOX1-223	ENST00000620507	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	14.04	□□□□□ -0.16
RBFOX1-223	ENST00000620507	CSRNP3	Q8WYN3	585 aa		13.98	□□□□□ -0.17
RBFOX1-223	ENST00000620507	PELP1	Q8IZL8	1130 aa	Known RBP	13.96	□□□□□ -0.18
RBFOX1-223	ENST00000620507	WIZ	O95785	1651 aa		13.95	□□□□□ -0.18
RBFOX1-223	ENST00000620507	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.94	□□□□□ -0.18
RBFOX1-223	ENST00000620507	CCDC88B	A6NC98	1476 aa		13.83	□□□□□ -0.19
RBFOX1-223	ENST00000620507	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.83	□□□□□ -0.2
RBFOX1-223	ENST00000620507	TOP2A	P11388	1531 aa	Known RBP	13.79	□□□□□ -0.2
RBFOX1-223	ENST00000620507	MYT1	Q01538	1121 aa		13.78	□□□□□ -0.2
RBFOX1-223	ENST00000620507	SMARCA4	P51532	1647 aa		13.76	□□□□□ -0.21
RBFOX1-223	ENST00000620507	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.76	□□□□□ -0.21
RBFOX1-223	ENST00000620507	EEA1	Q15075	1411 aa		13.76	□□□□□ -0.21
RBFOX1-223	ENST00000620507	ABCC8	Q09428	1581 aa		13.76	□□□□□ -0.21
RBFOX1-223	ENST00000620507	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.76	□□□□□ -0.21
RBFOX1-223	ENST00000620507	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.74	□□□□□ -0.21
RBFOX1-223	ENST00000620507	CEP162	Q5TB80	1403 aa		13.73	□□□□□ -0.21
RBFOX1-223	ENST00000620507	SOGA1	O94964	1423 aa		13.72	□□□□□ -0.21
RBFOX1-223	ENST00000620507	CENPB	P07199	599 aa	Predicted RBP	13.7	□□□□□ -0.22
RBFOX1-223	ENST00000620507	TNIK	Q9UKE5	1360 aa		13.7	□□□□□ -0.22
RBFOX1-223	ENST00000620507	GOLGA3	Q08378	1498 aa		13.67	□□□□□ -0.22
RBFOX1-223	ENST00000620507	ITGAE	P38570	1179 aa		13.64	□□□□□ -0.23
RBFOX1-223	ENST00000620507	DIEXF	Q68CQ4	756 aa	Known RBP	13.64	□□□□□ -0.23
RBFOX1-223	ENST00000620507	SMARCA2	P51531	1590 aa		13.63	□□□□□ -0.23
RBFOX1-223	ENST00000620507	CLIP1	P30622	1438 aa		13.61	□□□□□ -0.23
RBFOX1-223	ENST00000620507	CEP164	Q9UPV0	1460 aa		13.59	□□□□□ -0.23
RBFOX1-223	ENST00000620507	ATAD2B	Q9ULI0	1458 aa		13.58	□□□□□ -0.24
RBFOX1-223	ENST00000620507	YTHDC1	Q96MU7	727 aa	Known RBP	13.55	□□□□□ -0.24
RBFOX1-223	ENST00000620507	RUSC2	Q8N2Y8	1516 aa		13.53	□□□□□ -0.24
RBFOX1-223	ENST00000620507	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.49	□□□□□ -0.25
RBFOX1-223	ENST00000620507	KIF27	Q86VH2	1401 aa		13.45	□□□□□ -0.26
RBFOX1-223	ENST00000620507	P3H3	Q8IVL6	736 aa		13.45	□□□□□ -0.26
RBFOX1-223	ENST00000620507	FAM50A	Q14320	339 aa	Known RBP	13.44	□□□□□ -0.26
RBFOX1-223	ENST00000620507	BICRA	Q9NZM4	1560 aa		13.44	□□□□□ -0.26
RBFOX1-223	ENST00000620507	UNC13A	Q9UPW8	1703 aa		13.42	□□□□□ -0.26
RBFOX1-223	ENST00000620507	VPS8	Q8N3P4	1428 aa		13.39	□□□□□ -0.27
RBFOX1-223	ENST00000620507	RAPGEF2	Q9Y4G8	1499 aa		13.37	□□□□□ -0.27
RBFOX1-223	ENST00000620507	ACIN1	Q9UKV3	1341 aa	Known RBP	13.33	□□□□□ -0.28
RBFOX1-223	ENST00000620507	SYNJ1	O43426	1573 aa		13.32	□□□□□ -0.28
RBFOX1-223	ENST00000620507	NCAPD3	P42695	1498 aa		13.3	□□□□□ -0.28
RBFOX1-223	ENST00000620507	EIF4G1	Q04637	1599 aa	Known RBP	13.3	□□□□□ -0.28
RBFOX1-223	ENST00000620507	CUX2	O14529	1486 aa		13.3	□□□□□ -0.28
RBFOX1-223	ENST00000620507	NEUROD1	Q13562	356 aa		13.29	□□□□□ -0.28
RBFOX1-223	ENST00000620507	PEG3	Q9GZU2	1588 aa		13.29	□□□□□ -0.28
RBFOX1-223	ENST00000620507	GTF3C3	Q9Y5Q9	886 aa		13.28	□□□□□ -0.28
RBFOX1-223	ENST00000620507	CARMIL1	Q5VZK9	1371 aa		13.26	□□□□□ -0.29
RBFOX1-223	ENST00000620507	CADPS	Q9ULU8	1353 aa		13.26	□□□□□ -0.29
RBFOX1-223	ENST00000620507	KANK4	Q5T7N3	995 aa	Predicted RBP	13.25	□□□□□ -0.29
RBFOX1-223	ENST00000620507	KIF21B	O75037	1637 aa		13.23	□□□□□ -0.29
RBFOX1-223	ENST00000620507	SCAF1	Q9H7N4	1312 aa	Known RBP	13.22	□□□□□ -0.29
RBFOX1-223	ENST00000620507	MIER1	Q8N108	512 aa		13.18	□□□□□ -0.3
RBFOX1-223	ENST00000620507	TOP2B	Q02880	1626 aa		13.18	□□□□□ -0.3
RBFOX1-223	ENST00000620507	CCNB3	Q8WWL7	1395 aa		13.18	□□□□□ -0.3
RBFOX1-223	ENST00000620507	HMGXB3	Q12766	1538 aa		13.18	□□□□□ -0.3
RBFOX1-223	ENST00000620507	CFTR	P13569	1480 aa		13.17	□□□□□ -0.3
RBFOX1-223	ENST00000620507	CLSPN	Q9HAW4	1339 aa		13.17	□□□□□ -0.3
RBFOX1-223	ENST00000620507	ARID3C	A6NKF2	412 aa		13.15	□□□□□ -0.3
RBFOX1-223	ENST00000620507	TRIM52	Q96A61	297 aa		13.15	□□□□□ -0.3
RBFOX1-223	ENST00000620507	MTUS2	Q5JR59	1369 aa		13.14	□□□□□ -0.31
RBFOX1-223	ENST00000620507	FHAD1	B1AJZ9	1412 aa		13.13	□□□□□ -0.31
RBFOX1-223	ENST00000620507	IGF1R	P08069	1367 aa		13.12	□□□□□ -0.31
RBFOX1-223	ENST00000620507	PRX	Q9BXM0	1461 aa		13.11	□□□□□ -0.31
RBFOX1-223	ENST00000620507	CUX1	P39880	1505 aa		13.11	□□□□□ -0.31
RBFOX1-223	ENST00000620507	ERICH3	Q5RHP9	1530 aa		13.1	□□□□□ -0.31
RBFOX1-223	ENST00000620507	FBLN2	P98095	1184 aa		13.1	□□□□□ -0.31
RBFOX1-223	ENST00000620507	FANCD2	Q9BXW9	1451 aa		13.09	□□□□□ -0.31
RBFOX1-223	ENST00000620507	FGD5	Q6ZNL6	1462 aa		13.08	□□□□□ -0.32
RBFOX1-223	ENST00000620507	NEFL	P07196	543 aa		13.08	□□□□□ -0.32
RBFOX1-223	ENST00000620507	TDRD9	Q8NDG6	1382 aa	Known RBP	13.05	□□□□□ -0.32
RBFOX1-223	ENST00000620507	ARAP1	Q96P48	1450 aa		13.05	□□□□□ -0.32

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