RNA–Protein interactions for RNA: ENST00000483888.6

COL12A1-207, Transcript of collagen type XII alpha 1 chain, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene COL12A1, Length 9,637 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-207ENST00000483888 MYT1Q01538 1121 aa17.1■□□□□ 0.33
COL12A1-207ENST00000483888 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
COL12A1-207ENST00000483888 ERICH6Q7L0X2 663 aa16.42■□□□□ 0.22
COL12A1-207ENST00000483888 CENPBP07199 599 aaPredicted RBP16.22■□□□□ 0.19
COL12A1-207ENST00000483888 CCER1Q8TC90 406 aaPredicted RBP16.15■□□□□ 0.18
COL12A1-207ENST00000483888 TTBK1Q5TCY1 1321 aaPredicted RBP16.03■□□□□ 0.16
COL12A1-207ENST00000483888 PCGF6Q9BYE7 350 aa15.94■□□□□ 0.14
COL12A1-207ENST00000483888 SUPT5HO00267 1087 aaKnown RBP15.87■□□□□ 0.13
COL12A1-207ENST00000483888 DCAF8L2P0C7V8 631 aa15.83■□□□□ 0.12
COL12A1-207ENST00000483888 ZEB1P37275 1124 aaPredicted RBP15.78■□□□□ 0.12
COL12A1-207ENST00000483888 YTHDC1Q96MU7 727 aaKnown RBP15.67■□□□□ 0.1
COL12A1-207ENST00000483888 NEFLP07196 543 aa15.64■□□□□ 0.09
COL12A1-207ENST00000483888 EHMT2Q96KQ7 1210 aa15.64■□□□□ 0.09
COL12A1-207ENST00000483888 HRCP23327 699 aa15.4■□□□□ 0.06
COL12A1-207ENST00000483888 DAXXQ9UER7 740 aaPredicted RBP15.31■□□□□ 0.04
COL12A1-207ENST00000483888 APLP2Q06481 763 aa15.3■□□□□ 0.04
COL12A1-207ENST00000483888 RTL5Q5HYW3 569 aaPredicted RBP15.3■□□□□ 0.04
COL12A1-207ENST00000483888 SHROOM4Q9ULL8 1493 aa15.28■□□□□ 0.04
COL12A1-207ENST00000483888 PPARGC1BQ86YN6 1023 aaKnown RBP15.09■□□□□ 0.01
COL12A1-207ENST00000483888 GTF3C3Q9Y5Q9 886 aa15.07■□□□□ 0
COL12A1-207ENST00000483888 FAM9AQ8IZU1 332 aaPredicted RBP15.03■□□□□ -0
COL12A1-207ENST00000483888 EIF5BO60841 1220 aaKnown RBP15.03■□□□□ -0
COL12A1-207ENST00000483888 GLIPR1L2Q4G1C9 344 aa15□□□□□ -0.01
COL12A1-207ENST00000483888 TRIM26Q12899 539 aaPredicted RBP15□□□□□ -0.01
COL12A1-207ENST00000483888 ZNF316A6NFI3 1004 aaPredicted RBP14.99□□□□□ -0.01
COL12A1-207ENST00000483888 DIEXFQ68CQ4 756 aaKnown RBP14.89□□□□□ -0.03
COL12A1-207ENST00000483888 BCANQ96GW7 911 aa14.77□□□□□ -0.04
COL12A1-207ENST00000483888 ACIN1Q9UKV3 1341 aaKnown RBP14.75□□□□□ -0.05
COL12A1-207ENST00000483888 CDK11AQ9UQ88 783 aaPredicted RBP14.74□□□□□ -0.05
COL12A1-207ENST00000483888 MYT1LQ9UL68 1186 aa14.65□□□□□ -0.06
COL12A1-207ENST00000483888 CLSPNQ9HAW4 1339 aa14.63□□□□□ -0.07
COL12A1-207ENST00000483888 RANGAP1P46060 587 aaPredicted RBP14.62□□□□□ -0.07
COL12A1-207ENST00000483888 TRIM41Q8WV44 630 aa14.59□□□□□ -0.07
COL12A1-207ENST00000483888 ANP32AP39687 249 aaKnown RBP14.55□□□□□ -0.08
COL12A1-207ENST00000483888 BCL11AQ9H165 835 aa14.55□□□□□ -0.08
COL12A1-207ENST00000483888 SCAF1Q9H7N4 1312 aaKnown RBP14.52□□□□□ -0.09
COL12A1-207ENST00000483888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.48□□□□□ -0.09
COL12A1-207ENST00000483888 NBR1Q14596 966 aa14.47□□□□□ -0.09
COL12A1-207ENST00000483888 NISCHQ9Y2I1 1504 aa14.46□□□□□ -0.09
COL12A1-207ENST00000483888 UBTFP17480 764 aaKnown RBP14.46□□□□□ -0.09
COL12A1-207ENST00000483888 POLR3GLQ9BT43 218 aa14.44□□□□□ -0.1
COL12A1-207ENST00000483888 ATP1B4Q9UN42 357 aaPredicted RBP14.44□□□□□ -0.1
COL12A1-207ENST00000483888 CNGB1Q14028 1251 aaPredicted RBP14.41□□□□□ -0.1
COL12A1-207ENST00000483888 ANP32EQ9BTT0 268 aa14.4□□□□□ -0.1
COL12A1-207ENST00000483888 NPM2Q86SE8 214 aaKnown RBP14.36□□□□□ -0.11
COL12A1-207ENST00000483888 ANP32BQ92688 251 aaKnown RBP14.36□□□□□ -0.11
COL12A1-207ENST00000483888 LOC105371045A0A1W2PR82 267 aa14.32□□□□□ -0.12
COL12A1-207ENST00000483888 HNRNPUL2Q1KMD3 747 aaKnown RBP14.31□□□□□ -0.12
COL12A1-207ENST00000483888 NEUROD1Q13562 356 aa14.3□□□□□ -0.12
COL12A1-207ENST00000483888 FKBP8Q14318 412 aa14.26□□□□□ -0.13
COL12A1-207ENST00000483888 TNNT2P45379 298 aaPredicted RBP14.25□□□□□ -0.13
COL12A1-207ENST00000483888 ITGAEP38570 1179 aa14.24□□□□□ -0.13
COL12A1-207ENST00000483888 ANP32CO43423 234 aa14.22□□□□□ -0.13
COL12A1-207ENST00000483888 ZBTB47Q9UFB7 747 aaPredicted RBP14.22□□□□□ -0.13
COL12A1-207ENST00000483888 RTN4Q9NQC3 1192 aaKnown RBP14.21□□□□□ -0.13
COL12A1-207ENST00000483888 ARXQ96QS3 562 aa14.18□□□□□ -0.14
COL12A1-207ENST00000483888 SLC24A1O60721 1099 aa14.16□□□□□ -0.14
COL12A1-207ENST00000483888 CDK11BP21127 795 aaKnown RBP14.12□□□□□ -0.15
COL12A1-207ENST00000483888 NAP1L5Q96NT1 182 aaPredicted RBP14.07□□□□□ -0.16
COL12A1-207ENST00000483888 CHIC1Q5VXU3 224 aa14.04□□□□□ -0.16
COL12A1-207ENST00000483888 HSP90AA1P07900 732 aaKnown RBP14.02□□□□□ -0.16
COL12A1-207ENST00000483888 ERICH6BQ5W0A0 696 aa14.02□□□□□ -0.16
COL12A1-207ENST00000483888 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.02□□□□□ -0.17
COL12A1-207ENST00000483888 TRIM44Q96DX7 344 aaPredicted RBP14.01□□□□□ -0.17
COL12A1-207ENST00000483888 AMER1Q5JTC6 1135 aaPredicted RBP14□□□□□ -0.17
COL12A1-207ENST00000483888 NEFMP07197 916 aa13.98□□□□□ -0.17
COL12A1-207ENST00000483888 CANXP27824 592 aaKnown RBP13.97□□□□□ -0.17
COL12A1-207ENST00000483888 DEKP35659 375 aaKnown RBP13.96□□□□□ -0.17
COL12A1-207ENST00000483888 UPF2Q9HAU5 1272 aaKnown RBP13.96□□□□□ -0.18
COL12A1-207ENST00000483888 SLC4A1APQ9BWU0 796 aaKnown RBP13.94□□□□□ -0.18
COL12A1-207ENST00000483888 NCLP19338 710 aaKnown RBP13.93□□□□□ -0.18
COL12A1-207ENST00000483888 CCDC136Q96JN2 1154 aa13.89□□□□□ -0.19
COL12A1-207ENST00000483888 DDRGK1Q96HY6 314 aa13.85□□□□□ -0.19
COL12A1-207ENST00000483888 CSRNP3Q8WYN3 585 aa13.85□□□□□ -0.19
COL12A1-207ENST00000483888 HNRNPUQ00839 825 aaKnown RBP eCLIP13.84□□□□□ -0.19
COL12A1-207ENST00000483888 NOP58Q9Y2X3 529 aaKnown RBP13.82□□□□□ -0.2
COL12A1-207ENST00000483888 DNTTIP2Q5QJE6 756 aaKnown RBP13.81□□□□□ -0.2
COL12A1-207ENST00000483888 IRX6P78412 446 aaPredicted RBP13.8□□□□□ -0.2
COL12A1-207ENST00000483888 TRIM52Q96A61 297 aa13.78□□□□□ -0.2
COL12A1-207ENST00000483888 PPM1GO15355 546 aaPredicted RBP13.77□□□□□ -0.21
COL12A1-207ENST00000483888 MIER1Q8N108 512 aa13.76□□□□□ -0.21
COL12A1-207ENST00000483888 LAS1LQ9Y4W2 734 aaKnown RBP13.75□□□□□ -0.21
COL12A1-207ENST00000483888 ARID4BQ4LE39 1312 aaPredicted RBP13.75□□□□□ -0.21
COL12A1-207ENST00000483888 PRKCSHP14314 528 aaPredicted RBP13.74□□□□□ -0.21
COL12A1-207ENST00000483888 ZNF326Q5BKZ1 582 aaKnown RBP13.74□□□□□ -0.21
COL12A1-207ENST00000483888 FAM50AQ14320 339 aaKnown RBP13.74□□□□□ -0.21
COL12A1-207ENST00000483888 BECN1Q14457 450 aa13.73□□□□□ -0.21
COL12A1-207ENST00000483888 PTMAP06454 111 aaKnown RBP13.71□□□□□ -0.21
COL12A1-207ENST00000483888 SUPT16HQ9Y5B9 1047 aaKnown RBP13.68□□□□□ -0.22
COL12A1-207ENST00000483888 FAM9BQ8IZU0 186 aa13.68□□□□□ -0.22
COL12A1-207ENST00000483888 DCAF1Q9Y4B6 1507 aa13.68□□□□□ -0.22
COL12A1-207ENST00000483888 VSIG10Q8N0Z9 540 aa13.67□□□□□ -0.22
COL12A1-207ENST00000483888 DDX10Q13206 875 aaKnown RBP13.64□□□□□ -0.23
COL12A1-207ENST00000483888 GOLGA6L22H0YM25 854 aa13.63□□□□□ -0.23
COL12A1-207ENST00000483888 HSP90AA2PQ14568 343 aaPredicted RBP13.62□□□□□ -0.23
COL12A1-207ENST00000483888 RBM19Q9Y4C8 960 aaKnown RBP13.62□□□□□ -0.23
COL12A1-207ENST00000483888 PODXL2Q9NZ53 605 aa13.62□□□□□ -0.23
COL12A1-207ENST00000483888 ARID3AQ99856 593 aa13.61□□□□□ -0.23
COL12A1-207ENST00000483888 CCDC180Q9P1Z9 1646 aa13.61□□□□□ -0.23
COL12A1-207ENST00000483888 TNNT3P45378 269 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms