Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 POU5F1P3-201ENST00000428824 1078 ntBASIC19.34■□□□□ 0.69
VRK3Q8IV63 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
VRK3Q8IV63 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.34■□□□□ 0.69
VRK3Q8IV63 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.34■□□□□ 0.69
VRK3Q8IV63 AC069544.1-201ENST00000609399 999 ntBASIC19.34■□□□□ 0.69
VRK3Q8IV63 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.34■□□□□ 0.69
VRK3Q8IV63 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VRK3Q8IV63 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VRK3Q8IV63 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VRK3Q8IV63 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VRK3Q8IV63 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
VRK3Q8IV63 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VRK3Q8IV63 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VRK3Q8IV63 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.33■□□□□ 0.69
VRK3Q8IV63 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VRK3Q8IV63 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.33■□□□□ 0.68
VRK3Q8IV63 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.33■□□□□ 0.68
VRK3Q8IV63 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.33■□□□□ 0.68
VRK3Q8IV63 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.33■□□□□ 0.68
VRK3Q8IV63 AC006058.3-201ENST00000606217 1069 ntBASIC19.33■□□□□ 0.68
VRK3Q8IV63 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VRK3Q8IV63 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 AL121906.2-201ENST00000621597 723 ntBASIC19.32■□□□□ 0.68
VRK3Q8IV63 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 AL158211.5-201ENST00000623583 2518 ntBASIC19.32■□□□□ 0.68
VRK3Q8IV63 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
VRK3Q8IV63 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VRK3Q8IV63 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 KRT17P3-201ENST00000420566 1262 ntBASIC19.31■□□□□ 0.68
VRK3Q8IV63 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 AL121829.2-201ENST00000620908 328 ntBASIC19.31■□□□□ 0.68
VRK3Q8IV63 AC073648.6-201ENST00000641589 218 ntBASIC19.31■□□□□ 0.68
VRK3Q8IV63 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VRK3Q8IV63 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.31■□□□□ 0.68
VRK3Q8IV63 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VRK3Q8IV63 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VRK3Q8IV63 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms