Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
SH3RF1Q7Z6J0 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 RARRES2P10-201ENST00000564312 460 ntBASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.69■■□□□ 1.22
SH3RF1Q7Z6J0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 AC087633.2-202ENST00000565166 1439 ntBASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 DPP3P2-201ENST00000416030 1696 ntBASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC22.68■■□□□ 1.22
SH3RF1Q7Z6J0 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 SERP1-205ENST00000487153 657 ntTSL 4 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SH3RF1Q7Z6J0 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SH3RF1Q7Z6J0 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SH3RF1Q7Z6J0 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms