Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SGSH-216ENST00000576856 818 ntTSL 322.62■■□□□ 1.211e-7■■■■□ 22.8
UPF1Q92900 TNRC6C-AS1-201ENST00000589217 3192 ntTSL 1 (best) BASIC10.89□□□□□ -0.677e-7■■■■□ 22.8
UPF1Q92900 CALR-203ENST00000586803 667 ntTSL 218.7■□□□□ 0.588e-23■■■■□ 22.8
UPF1Q92900 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.992e-7■■■■□ 22.8
UPF1Q92900 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.73■□□□□ 0.912e-7■■■■□ 22.8
UPF1Q92900 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC39.2■■■■□ 3.877e-6■■■■□ 22.8
UPF1Q92900 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC38.43■■■■□ 3.747e-6■■■■□ 22.8
UPF1Q92900 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC36.27■■■■□ 3.47e-6■■■■□ 22.8
UPF1Q92900 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.34■■■□□ 2.777e-6■■■■□ 22.8
UPF1Q92900 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC32.2■■■□□ 2.757e-6■■■■□ 22.8
UPF1Q92900 ECI1-206ENST00000566379 961 ntTSL 231.18■■■□□ 2.587e-6■■■■□ 22.8
UPF1Q92900 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.027e-6■■■■□ 22.8
UPF1Q92900 LPAR2-206ENST00000589311 355 ntTSL 425.87■■□□□ 1.737e-6■■■■□ 22.8
UPF1Q92900 AKT1-209ENST00000554585 858 ntTSL 325.39■■□□□ 1.667e-6■■■■□ 22.8
UPF1Q92900 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.657e-6■■■■□ 22.8
UPF1Q92900 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.587e-13■■■■□ 22.8
UPF1Q92900 LPAR2-205ENST00000588461 609 ntTSL 424.76■■□□□ 1.557e-6■■■■□ 22.8
UPF1Q92900 FBXL19-208ENST00000565939 817 ntTSL 224.44■■□□□ 1.57e-6■■■■□ 22.8
UPF1Q92900 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC23.69■■□□□ 1.387e-6■■■■□ 22.8
UPF1Q92900 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.45■■□□□ 1.197e-6■■■■□ 22.8
UPF1Q92900 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC21.77■■□□□ 1.077e-6■■■■□ 22.8
UPF1Q92900 SMG6-220ENST00000576218 902 ntTSL 321.18■□□□□ 0.984e-11■■■■□ 22.8
UPF1Q92900 CTIF-211ENST00000592658 952 ntTSL 220.92■□□□□ 0.947e-6■■■■□ 22.8
UPF1Q92900 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC20.5■□□□□ 0.877e-6■■■■□ 22.8
UPF1Q92900 ARHGEF25-205ENST00000471370 1945 ntTSL 519.51■□□□□ 0.717e-6■■■■□ 22.8
UPF1Q92900 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.77e-6■■■■□ 22.8
UPF1Q92900 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC19.24■□□□□ 0.677e-6■■■■□ 22.8
UPF1Q92900 AGAP3-203ENST00000461065 1707 ntTSL 1 (best)19.2■□□□□ 0.667e-6■■■■□ 22.8
UPF1Q92900 ARHGEF25-206ENST00000477314 687 ntTSL 319.15■□□□□ 0.667e-6■■■■□ 22.8
UPF1Q92900 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.44■□□□□ 0.387e-6■■■■□ 22.8
UPF1Q92900 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.79■□□□□ 0.287e-6■■■■□ 22.8
UPF1Q92900 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.287e-6■■■■□ 22.8
UPF1Q92900 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.177e-6■■■■□ 22.8
UPF1Q92900 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.117e-6■■■■□ 22.8
UPF1Q92900 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.097e-6■■■■□ 22.8
UPF1Q92900 SMIM14-207ENST00000630374 608 ntTSL 515.47■□□□□ 0.077e-6■■■■□ 22.8
UPF1Q92900 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.057e-6■■■■□ 22.8
UPF1Q92900 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC14.67□□□□□ -0.067e-6■■■■□ 22.8
UPF1Q92900 AC006504.5-209ENST00000591549 500 ntTSL 3 BASIC14.43□□□□□ -0.17e-6■■■■□ 22.8
UPF1Q92900 AGAP3-226ENST00000622464 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.157e-6■■■■□ 22.8
UPF1Q92900 ZNF410-217ENST00000556396 1961 ntTSL 214□□□□□ -0.177e-6■■■■□ 22.8
UPF1Q92900 SMG6-218ENST00000575454 652 ntTSL 313.95□□□□□ -0.187e-6■■■■□ 22.8
UPF1Q92900 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.75□□□□□ -0.217e-6■■■■□ 22.8
UPF1Q92900 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.257e-6■■■■□ 22.8
UPF1Q92900 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.277e-6■■■■□ 22.8
UPF1Q92900 TBC1D14-201ENST00000409757 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.287e-6■■■■□ 22.8
UPF1Q92900 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.291e-10■■■■□ 22.8
UPF1Q92900 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.327e-6■■■■□ 22.8
UPF1Q92900 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.357e-6■■■■□ 22.8
UPF1Q92900 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC12.82□□□□□ -0.367e-6■■■■□ 22.8
UPF1Q92900 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.78□□□□□ -0.367e-6■■■■□ 22.8
UPF1Q92900 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.367e-6■■■■□ 22.8
UPF1Q92900 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC12.64□□□□□ -0.397e-6■■■■□ 22.8
UPF1Q92900 GALC-209ENST00000555000 2067 ntTSL 211.99□□□□□ -0.497e-6■■■■□ 22.8
UPF1Q92900 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC11.98□□□□□ -0.497e-6■■■■□ 22.8
UPF1Q92900 TBC1D14-207ENST00000448507 4887 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.657e-6■■■■□ 22.8
UPF1Q92900 ISG20L2-206ENST00000496538 872 ntTSL 210.83□□□□□ -0.687e-6■■■■□ 22.8
UPF1Q92900 AGAP3-212ENST00000473633 3751 ntTSL 1 (best)10.11□□□□□ -0.797e-6■■■■□ 22.8
UPF1Q92900 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC10.02□□□□□ -0.817e-6■■■■□ 22.8
UPF1Q92900 TBC1D14-202ENST00000410031 4201 ntTSL 5 BASIC9.95□□□□□ -0.827e-6■■■■□ 22.8
UPF1Q92900 PRDM10-201ENST00000304538 5817 ntTSL 1 (best) BASIC9.94□□□□□ -0.827e-6■■■■□ 22.8
UPF1Q92900 TBC1D14-206ENST00000446947 4021 ntTSL 5 BASIC9.84□□□□□ -0.837e-6■■■■□ 22.8
UPF1Q92900 TCF20-202ENST00000359486 7410 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.867e-6■■■■□ 22.8
UPF1Q92900 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC9.05□□□□□ -0.967e-6■■■■□ 22.8
UPF1Q92900 AC005520.1-201ENST00000556551 3695 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.077e-6■■■■□ 22.8
UPF1Q92900 ZNF410-203ENST00000398139 2461 ntTSL 1 (best)8.31□□□□□ -1.087e-6■■■■□ 22.8
UPF1Q92900 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.17e-6■■■■□ 22.8
UPF1Q92900 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.167e-6■■■■□ 22.8
UPF1Q92900 SMG6-217ENST00000575338 546 ntTSL 47.75□□□□□ -1.177e-6■■■■□ 22.8
UPF1Q92900 GTF2IP4-201ENST00000453092 2054 ntBASIC7.57□□□□□ -1.27e-6■■■■□ 22.8
UPF1Q92900 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.52□□□□□ -1.377e-6■■■■□ 22.8
UPF1Q92900 ZNF311-204ENST00000483450 3027 ntTSL 26.51□□□□□ -1.377e-6■■■■□ 22.8
UPF1Q92900 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.617e-6■■■■□ 22.8
UPF1Q92900 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.241e-6■■■■□ 22.8
UPF1Q92900 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.151e-6■■■■□ 22.8
UPF1Q92900 AK2-202ENST00000373449 3586 ntAPPRIS ALT1 TSL 1 (best) BASIC11.17□□□□□ -0.622e-14■■■■□ 22.8
UPF1Q92900 AK2-215ENST00000629371 3576 ntTSL 3 BASIC10.29□□□□□ -0.762e-14■■■■□ 22.8
UPF1Q92900 ESYT1-206ENST00000550515 716 ntTSL 221.47■■□□□ 1.032e-19■■■■□ 22.8
UPF1Q92900 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.77■□□□□ 0.65e-7■■■■□ 22.8
UPF1Q92900 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.585e-7■■■■□ 22.8
UPF1Q92900 FAM102A-201ENST00000300434 3148 ntTSL 1 (best)14.37□□□□□ -0.112e-6■■■■□ 22.8
UPF1Q92900 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC13.89□□□□□ -0.192e-6■■■■□ 22.8
UPF1Q92900 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.292e-6■■■■□ 22.8
UPF1Q92900 FAM102A-203ENST00000373095 4144 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.392e-6■■■■□ 22.8
UPF1Q92900 FAM102A-204ENST00000465821 4316 ntTSL 211.6□□□□□ -0.552e-6■■■■□ 22.8
UPF1Q92900 LARP1-201ENST00000336314 6595 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.46e-16■■■■□ 22.7
UPF1Q92900 GALM-202ENST00000410063 1023 ntTSL 3 BASIC16.48■□□□□ 0.231e-8■■■■□ 22.7
UPF1Q92900 SF1-210ENST00000443908 767 ntTSL 318.87■□□□□ 0.618e-34■■■■□ 22.7
UPF1Q92900 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.072e-6■■■■□ 22.7
UPF1Q92900 ZNF726-202ENST00000334589 847 ntTSL 3 BASIC14.21□□□□□ -0.135e-7■■■■□ 22.7
UPF1Q92900 ZNF726-206ENST00000594466 2473 ntTSL 5 BASIC10.22□□□□□ -0.775e-7■■■■□ 22.7
UPF1Q92900 ZNF726-201ENST00000322487 2330 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.875e-7■■■■□ 22.7
UPF1Q92900 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC8.97□□□□□ -0.975e-7■■■■□ 22.7
UPF1Q92900 C6orf89-202ENST00000359359 2565 ntTSL 5 BASIC8.99□□□□□ -0.974e-7■■■■□ 22.7
UPF1Q92900 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.494e-7■■■■□ 22.7
UPF1Q92900 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.184e-7■■■■□ 22.7
UPF1Q92900 ATF7-201ENST00000420353 6680 ntAPPRIS P2 TSL 1 (best) BASIC9.53□□□□□ -0.884e-7■■■■□ 22.7
UPF1Q92900 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.137e-7■■■■□ 22.7
UPF1Q92900 MVB12B-204ENST00000485886 4537 ntTSL 213.05□□□□□ -0.327e-7■■■■□ 22.7
UPF1Q92900 GTF2H3-214ENST00000618160 3252 ntTSL 5 BASIC11.21□□□□□ -0.622e-8■■■■□ 22.7
Retrieved 100 of 15,879 protein–RNA pairs in 221 ms