Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
TPM1P09493 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.78■■□□□ 1.08
TPM1P09493 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
TPM1P09493 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
TPM1P09493 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.77■■□□□ 1.08
TPM1P09493 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.77■■□□□ 1.08
TPM1P09493 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
TPM1P09493 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
TPM1P09493 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TPM1P09493 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TPM1P09493 AC019069.1-201ENST00000610008 1333 ntBASIC21.77■■□□□ 1.07
TPM1P09493 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
TPM1P09493 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TPM1P09493 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.76■■□□□ 1.07
TPM1P09493 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
TPM1P09493 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.76■■□□□ 1.07
TPM1P09493 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
TPM1P09493 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
TPM1P09493 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.76■■□□□ 1.07
TPM1P09493 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 AC123595.1-201ENST00000440769 1046 ntBASIC21.76■■□□□ 1.07
TPM1P09493 AC087633.2-202ENST00000565166 1439 ntBASIC21.76■■□□□ 1.07
TPM1P09493 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.76■■□□□ 1.07
TPM1P09493 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
TPM1P09493 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TPM1P09493 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
TPM1P09493 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
TPM1P09493 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 LETM1P2-201ENST00000597330 2178 ntBASIC21.75■■□□□ 1.07
TPM1P09493 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.75■■□□□ 1.07
TPM1P09493 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
TPM1P09493 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
TPM1P09493 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.75■■□□□ 1.07
TPM1P09493 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.75■■□□□ 1.07
TPM1P09493 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.75■■□□□ 1.07
TPM1P09493 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.75■■□□□ 1.07
TPM1P09493 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.75■■□□□ 1.07
TPM1P09493 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.75■■□□□ 1.07
TPM1P09493 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.75■■□□□ 1.07
TPM1P09493 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TPM1P09493 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.74■■□□□ 1.07
TPM1P09493 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
TPM1P09493 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
TPM1P09493 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
TPM1P09493 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
TPM1P09493 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.74■■□□□ 1.07
TPM1P09493 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.74■■□□□ 1.07
TPM1P09493 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.74■■□□□ 1.07
TPM1P09493 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.74■■□□□ 1.07
TPM1P09493 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TPM1P09493 AC009237.14-201ENST00000609975 1594 ntBASIC21.74■■□□□ 1.07
TPM1P09493 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.73■■□□□ 1.07
TPM1P09493 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.73■■□□□ 1.07
TPM1P09493 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 AC026471.1-201ENST00000564629 3026 ntBASIC21.73■■□□□ 1.07
TPM1P09493 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TPM1P09493 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
TPM1P09493 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.73■■□□□ 1.07
TPM1P09493 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.73■■□□□ 1.07
TPM1P09493 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.73■■□□□ 1.07
TPM1P09493 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms