Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC16.58■□□□□ 0.24
ABCA1O95477 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.58■□□□□ 0.24
ABCA1O95477 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.58■□□□□ 0.24
ABCA1O95477 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.58■□□□□ 0.24
ABCA1O95477 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
ABCA1O95477 AC010947.1-201ENST00000623454 693 ntBASIC16.58■□□□□ 0.24
ABCA1O95477 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.58■□□□□ 0.24
ABCA1O95477 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ABCA1O95477 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
ABCA1O95477 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.57■□□□□ 0.24
ABCA1O95477 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 AC004264.1-201ENST00000608354 794 ntBASIC16.57■□□□□ 0.24
ABCA1O95477 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.57■□□□□ 0.24
ABCA1O95477 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.57■□□□□ 0.24
ABCA1O95477 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
ABCA1O95477 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 SLC25A3P1-201ENST00000443844 931 ntBASIC16.57■□□□□ 0.24
ABCA1O95477 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.57■□□□□ 0.24
ABCA1O95477 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.57■□□□□ 0.24
ABCA1O95477 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.57■□□□□ 0.24
ABCA1O95477 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.57■□□□□ 0.24
ABCA1O95477 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
ABCA1O95477 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
ABCA1O95477 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 TERF1P1-201ENST00000311003 1181 ntBASIC16.56■□□□□ 0.24
ABCA1O95477 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.56■□□□□ 0.24
ABCA1O95477 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.56■□□□□ 0.24
ABCA1O95477 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
ABCA1O95477 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.56■□□□□ 0.24
ABCA1O95477 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.56■□□□□ 0.24
ABCA1O95477 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.56■□□□□ 0.24
ABCA1O95477 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
ABCA1O95477 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.55■□□□□ 0.24
ABCA1O95477 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.55■□□□□ 0.24
ABCA1O95477 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.55■□□□□ 0.24
ABCA1O95477 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
ABCA1O95477 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.55■□□□□ 0.24
ABCA1O95477 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.55■□□□□ 0.24
ABCA1O95477 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.55■□□□□ 0.24
ABCA1O95477 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.55■□□□□ 0.24
ABCA1O95477 AP000525.1-201ENST00000608286 694 ntBASIC16.55■□□□□ 0.24
ABCA1O95477 AC005363.2-201ENST00000618631 242 ntBASIC16.55■□□□□ 0.24
ABCA1O95477 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.55■□□□□ 0.24
ABCA1O95477 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
ABCA1O95477 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.55■□□□□ 0.24
ABCA1O95477 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
ABCA1O95477 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
ABCA1O95477 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms