Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 PHGDH-210ENST00000641115 1638 ntBASIC19.6■□□□□ 0.73
MKS1Q9NXB0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
MKS1Q9NXB0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 MCRIP2P1-201ENST00000394346 511 ntBASIC19.59■□□□□ 0.73
MKS1Q9NXB0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 AC105020.6-201ENST00000621523 1217 ntBASIC19.59■□□□□ 0.73
MKS1Q9NXB0 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
MKS1Q9NXB0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MKS1Q9NXB0 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
MKS1Q9NXB0 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
MKS1Q9NXB0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
MKS1Q9NXB0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
MKS1Q9NXB0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
MKS1Q9NXB0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 AC013268.1-206ENST00000638368 961 ntBASIC19.57■□□□□ 0.72
MKS1Q9NXB0 AC112229.1-201ENST00000639295 961 ntBASIC19.57■□□□□ 0.72
MKS1Q9NXB0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
MKS1Q9NXB0 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 HLA-G-202ENST00000376815 851 ntBASIC19.56■□□□□ 0.72
MKS1Q9NXB0 HLA-G-203ENST00000376818 1127 ntBASIC19.56■□□□□ 0.72
MKS1Q9NXB0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 MFSD11-216ENST00000590393 1141 ntBASIC19.56■□□□□ 0.72
MKS1Q9NXB0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
MKS1Q9NXB0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms