Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
LIG3P49916 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
LIG3P49916 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIG3P49916 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
LIG3P49916 AC093787.1-201ENST00000450396 207 ntBASIC20.75■□□□□ 0.91
LIG3P49916 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.75■□□□□ 0.91
LIG3P49916 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.75■□□□□ 0.91
LIG3P49916 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.75■□□□□ 0.91
LIG3P49916 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.75■□□□□ 0.91
LIG3P49916 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIG3P49916 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.74■□□□□ 0.91
LIG3P49916 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIG3P49916 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
LIG3P49916 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.74■□□□□ 0.91
LIG3P49916 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 RARRES2P4-201ENST00000514074 484 ntBASIC20.74■□□□□ 0.91
LIG3P49916 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.74■□□□□ 0.91
LIG3P49916 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
LIG3P49916 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.74■□□□□ 0.91
LIG3P49916 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.74■□□□□ 0.91
LIG3P49916 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
LIG3P49916 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 AC005332.8-201ENST00000622750 2735 ntBASIC20.74■□□□□ 0.91
LIG3P49916 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.74■□□□□ 0.91
LIG3P49916 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
LIG3P49916 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIG3P49916 LTB4R2-202ENST00000528054 3092 ntBASIC20.74■□□□□ 0.91
LIG3P49916 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.73■□□□□ 0.91
LIG3P49916 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.73■□□□□ 0.91
LIG3P49916 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
LIG3P49916 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
LIG3P49916 AL512625.2-201ENST00000417533 625 ntBASIC20.73■□□□□ 0.91
LIG3P49916 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.73■□□□□ 0.91
LIG3P49916 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.73■□□□□ 0.91
LIG3P49916 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.73■□□□□ 0.91
LIG3P49916 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
LIG3P49916 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LIG3P49916 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
LIG3P49916 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LIG3P49916 MKRN4P-201ENST00000444706 1521 ntBASIC20.73■□□□□ 0.91
LIG3P49916 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.73■□□□□ 0.91
LIG3P49916 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.72■□□□□ 0.91
LIG3P49916 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LIG3P49916 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
LIG3P49916 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.72■□□□□ 0.91
LIG3P49916 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LIG3P49916 CDV3P1-201ENST00000471403 739 ntBASIC20.72■□□□□ 0.91
LIG3P49916 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.72■□□□□ 0.91
LIG3P49916 AL138781.1-201ENST00000566567 1274 ntBASIC20.72■□□□□ 0.91
LIG3P49916 AC142086.2-201ENST00000569753 217 ntBASIC20.72■□□□□ 0.91
LIG3P49916 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.72■□□□□ 0.91
LIG3P49916 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LIG3P49916 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.72■□□□□ 0.91
LIG3P49916 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LIG3P49916 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LIG3P49916 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.71■□□□□ 0.91
LIG3P49916 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LIG3P49916 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.71■□□□□ 0.91
LIG3P49916 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.71■□□□□ 0.91
LIG3P49916 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.71■□□□□ 0.91
LIG3P49916 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms