Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HLA-DQA1P01909 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 AC018470.1-201ENST00000624790 3129 ntBASIC14.92□□□□□ -0.02
HLA-DQA1P01909 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 TRIR-202ENST00000588213 841 ntTSL 3 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 AP000997.3-201ENST00000623333 2250 ntBASIC14.92□□□□□ -0.02
HLA-DQA1P01909 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HLA-DQA1P01909 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 SRR-208ENST00000576848 588 ntTSL 4 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 AC131212.1-201ENST00000613771 668 ntBASIC14.91□□□□□ -0.02
HLA-DQA1P01909 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 FZD10-202ENST00000539839 3282 ntBASIC14.91□□□□□ -0.02
HLA-DQA1P01909 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HLA-DQA1P01909 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 CROCCP3-202ENST00000420820 1947 ntBASIC14.9□□□□□ -0.02
HLA-DQA1P01909 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DQA1P01909 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DQA1P01909 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms