Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TMX2-CTNND1H3BSU7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.52■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.52■□□□□ 0.72
TMX2-CTNND1H3BSU7 AC124016.1-201ENST00000609552 612 ntBASIC19.52■□□□□ 0.72
TMX2-CTNND1H3BSU7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
TMX2-CTNND1H3BSU7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
TMX2-CTNND1H3BSU7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TMX2-CTNND1H3BSU7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TMX2-CTNND1H3BSU7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TMX2-CTNND1H3BSU7 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
TMX2-CTNND1H3BSU7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 PRKY-204ENST00000533551 1019 ntBASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 LINC01023-201ENST00000606054 436 ntBASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TMX2-CTNND1H3BSU7 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 AL023875.1-201ENST00000640777 796 ntBASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.49■□□□□ 0.71
TMX2-CTNND1H3BSU7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TMX2-CTNND1H3BSU7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 AC211429.1-201ENST00000415277 523 ntBASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.47■□□□□ 0.71
TMX2-CTNND1H3BSU7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms