Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 AC006015.1-201ENST00000429970 570 ntBASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 AC116562.4-201ENST00000641316 2276 ntBASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM56Q9BRZ2 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 AC016769.1-201ENST00000409132 1010 ntBASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM56Q9BRZ2 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 IKBKGP1-201ENST00000612193 1073 ntBASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 AC092437.1-201ENST00000624794 1048 ntBASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM56Q9BRZ2 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM56Q9BRZ2 PTBP1P-201ENST00000554374 1601 ntBASIC20.27■□□□□ 0.83
TRIM56Q9BRZ2 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.27■□□□□ 0.83
TRIM56Q9BRZ2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM56Q9BRZ2 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRIM56Q9BRZ2 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 KRT18P11-201ENST00000435214 1283 ntBASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 RARRES2P4-201ENST00000514074 484 ntBASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 AC087289.5-201ENST00000586076 3175 ntBASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM56Q9BRZ2 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 AC090192.1-201ENST00000517740 490 ntBASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 AL137784.2-201ENST00000607332 1000 ntBASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM56Q9BRZ2 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM56Q9BRZ2 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms