Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 TMEM179-206ENST00000616017 1645 ntBASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ZNF540Q8NDQ6 AC009237.3-201ENST00000393279 1427 ntBASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.4■□□□□ 0.54
ZNF540Q8NDQ6 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
ZNF540Q8NDQ6 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
ZNF540Q8NDQ6 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
ZNF540Q8NDQ6 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.39■□□□□ 0.54
ZNF540Q8NDQ6 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 AC093503.3-201ENST00000624917 2352 ntBASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 NEFHP1-201ENST00000412845 2629 ntBASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 HCG11-201ENST00000411553 5696 ntBASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 AC026471.1-201ENST00000564629 3026 ntBASIC18.39■□□□□ 0.53
ZNF540Q8NDQ6 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 AC090192.1-201ENST00000517740 490 ntBASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 IKBKGP1-201ENST00000612193 1073 ntBASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ZNF540Q8NDQ6 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ZNF540Q8NDQ6 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms