Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 AP001271.2-201ENST00000624018 1556 ntBASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LRIF1Q5T3J3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 KRT8P20-201ENST00000423953 1409 ntBASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 RARRES2P4-201ENST00000514074 484 ntBASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 NTF6G-201ENST00000591094 616 ntBASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LRIF1Q5T3J3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LRIF1Q5T3J3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
LRIF1Q5T3J3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
LRIF1Q5T3J3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 KRT18P11-201ENST00000435214 1283 ntBASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 AC105020.6-201ENST00000621523 1217 ntBASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LRIF1Q5T3J3 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LRIF1Q5T3J3 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms