Protein–RNA interactions for Protein: Q8NEM2

SHCBP1, SHC SH2 domain-binding protein 1, humanhuman

Predictions only

Length 672 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1Q8NEM2 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHCBP1Q8NEM2 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SHCBP1Q8NEM2 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
SHCBP1Q8NEM2 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.01■■■□□ 2.4
SHCBP1Q8NEM2 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.01■■■□□ 2.39
SHCBP1Q8NEM2 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.01■■■□□ 2.39
SHCBP1Q8NEM2 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
SHCBP1Q8NEM2 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SHCBP1Q8NEM2 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
SHCBP1Q8NEM2 CHST11-202ENST00000546689 756 ntTSL 2 BASIC29.99■■■□□ 2.39
SHCBP1Q8NEM2 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SHCBP1Q8NEM2 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SHCBP1Q8NEM2 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SHCBP1Q8NEM2 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SHCBP1Q8NEM2 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SHCBP1Q8NEM2 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
SHCBP1Q8NEM2 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.97■■■□□ 2.39
SHCBP1Q8NEM2 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
SHCBP1Q8NEM2 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
SHCBP1Q8NEM2 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SHCBP1Q8NEM2 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
SHCBP1Q8NEM2 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SHCBP1Q8NEM2 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
SHCBP1Q8NEM2 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.92■■■□□ 2.38
SHCBP1Q8NEM2 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.92■■■□□ 2.38
SHCBP1Q8NEM2 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.89■■■□□ 2.38
SHCBP1Q8NEM2 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.88■■■□□ 2.37
SHCBP1Q8NEM2 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC29.88■■■□□ 2.37
SHCBP1Q8NEM2 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SHCBP1Q8NEM2 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
SHCBP1Q8NEM2 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SHCBP1Q8NEM2 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.86■■■□□ 2.37
SHCBP1Q8NEM2 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
SHCBP1Q8NEM2 RARRES2P2-201ENST00000394842 485 ntBASIC29.85■■■□□ 2.37
SHCBP1Q8NEM2 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
SHCBP1Q8NEM2 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHCBP1Q8NEM2 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SHCBP1Q8NEM2 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.83■■■□□ 2.37
SHCBP1Q8NEM2 GPX1-201ENST00000419349 1106 ntBASIC29.82■■■□□ 2.36
SHCBP1Q8NEM2 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
SHCBP1Q8NEM2 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.81■■■□□ 2.36
SHCBP1Q8NEM2 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC29.8■■■□□ 2.36
SHCBP1Q8NEM2 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SHCBP1Q8NEM2 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHCBP1Q8NEM2 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SHCBP1Q8NEM2 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.79■■■□□ 2.36
SHCBP1Q8NEM2 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
SHCBP1Q8NEM2 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
SHCBP1Q8NEM2 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
SHCBP1Q8NEM2 RNF126P1-201ENST00000567452 1320 ntBASIC29.76■■■□□ 2.36
SHCBP1Q8NEM2 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
SHCBP1Q8NEM2 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHCBP1Q8NEM2 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.75■■■□□ 2.35
SHCBP1Q8NEM2 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC29.75■■■□□ 2.35
SHCBP1Q8NEM2 ABHD17AP5-201ENST00000580133 923 ntBASIC29.75■■■□□ 2.35
SHCBP1Q8NEM2 AC127502.1-201ENST00000399971 1502 ntBASIC29.75■■■□□ 2.35
SHCBP1Q8NEM2 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHCBP1Q8NEM2 AC008813.1-201ENST00000536597 885 ntBASIC29.74■■■□□ 2.35
SHCBP1Q8NEM2 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHCBP1Q8NEM2 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHCBP1Q8NEM2 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHCBP1Q8NEM2 AC135983.2-203ENST00000454486 1613 ntBASIC29.71■■■□□ 2.35
SHCBP1Q8NEM2 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
SHCBP1Q8NEM2 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHCBP1Q8NEM2 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.71■■■□□ 2.35
SHCBP1Q8NEM2 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHCBP1Q8NEM2 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC29.7■■■□□ 2.35
SHCBP1Q8NEM2 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHCBP1Q8NEM2 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHCBP1Q8NEM2 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC29.69■■■□□ 2.34
SHCBP1Q8NEM2 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHCBP1Q8NEM2 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29.68■■■□□ 2.34
SHCBP1Q8NEM2 CEP120-209ENST00000515110 606 ntTSL 3 BASIC29.68■■■□□ 2.34
SHCBP1Q8NEM2 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SHCBP1Q8NEM2 WHAMMP2-203ENST00000563942 1603 ntBASIC29.67■■■□□ 2.34
SHCBP1Q8NEM2 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHCBP1Q8NEM2 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
SHCBP1Q8NEM2 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
SHCBP1Q8NEM2 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SHCBP1Q8NEM2 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC29.65■■■□□ 2.34
SHCBP1Q8NEM2 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SHCBP1Q8NEM2 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.63■■■□□ 2.33
SHCBP1Q8NEM2 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SHCBP1Q8NEM2 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.62■■■□□ 2.33
SHCBP1Q8NEM2 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms