Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM1Q2M3G4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHROOM1Q2M3G4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
SHROOM1Q2M3G4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
SHROOM1Q2M3G4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SHROOM1Q2M3G4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
SHROOM1Q2M3G4 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.77■■■□□ 2.52
SHROOM1Q2M3G4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.76■■■□□ 2.51
SHROOM1Q2M3G4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SHROOM1Q2M3G4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.75■■■□□ 2.51
SHROOM1Q2M3G4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM1Q2M3G4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.75■■■□□ 2.51
SHROOM1Q2M3G4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SHROOM1Q2M3G4 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM1Q2M3G4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.74■■■□□ 2.51
SHROOM1Q2M3G4 HSD17B1P1-201ENST00000590052 955 ntBASIC30.74■■■□□ 2.51
SHROOM1Q2M3G4 LINC00273-201ENST00000539813 1452 ntBASIC30.74■■■□□ 2.51
SHROOM1Q2M3G4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHROOM1Q2M3G4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM1Q2M3G4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHROOM1Q2M3G4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
SHROOM1Q2M3G4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHROOM1Q2M3G4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM1Q2M3G4 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
SHROOM1Q2M3G4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.7■■■□□ 2.5
SHROOM1Q2M3G4 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.5
SHROOM1Q2M3G4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM1Q2M3G4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC30.68■■■□□ 2.5
SHROOM1Q2M3G4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHROOM1Q2M3G4 AC127502.1-201ENST00000399971 1502 ntBASIC30.68■■■□□ 2.5
SHROOM1Q2M3G4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
SHROOM1Q2M3G4 AL135925.1-201ENST00000605920 1701 ntBASIC30.64■■■□□ 2.5
SHROOM1Q2M3G4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM1Q2M3G4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM1Q2M3G4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM1Q2M3G4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM1Q2M3G4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.5
SHROOM1Q2M3G4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC30.63■■■□□ 2.49
SHROOM1Q2M3G4 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.63■■■□□ 2.49
SHROOM1Q2M3G4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SHROOM1Q2M3G4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHROOM1Q2M3G4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.61■■■□□ 2.49
SHROOM1Q2M3G4 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC30.6■■■□□ 2.49
SHROOM1Q2M3G4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.6■■■□□ 2.49
SHROOM1Q2M3G4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM1Q2M3G4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
SHROOM1Q2M3G4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
SHROOM1Q2M3G4 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM1Q2M3G4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.58■■■□□ 2.49
SHROOM1Q2M3G4 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM1Q2M3G4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM1Q2M3G4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM1Q2M3G4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.57■■■□□ 2.48
SHROOM1Q2M3G4 WHAMMP2-203ENST00000563942 1603 ntBASIC30.57■■■□□ 2.48
SHROOM1Q2M3G4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM1Q2M3G4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.56■■■□□ 2.48
SHROOM1Q2M3G4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.56■■■□□ 2.48
SHROOM1Q2M3G4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.56■■■□□ 2.48
SHROOM1Q2M3G4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.54■■■□□ 2.48
SHROOM1Q2M3G4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.52■■■□□ 2.48
SHROOM1Q2M3G4 AC135983.2-203ENST00000454486 1613 ntBASIC30.51■■■□□ 2.48
SHROOM1Q2M3G4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM1Q2M3G4 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHROOM1Q2M3G4 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
SHROOM1Q2M3G4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.51■■■□□ 2.47
SHROOM1Q2M3G4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.51■■■□□ 2.47
SHROOM1Q2M3G4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.47
SHROOM1Q2M3G4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHROOM1Q2M3G4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
SHROOM1Q2M3G4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.48■■■□□ 2.47
SHROOM1Q2M3G4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.48■■■□□ 2.47
SHROOM1Q2M3G4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHROOM1Q2M3G4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.47■■■□□ 2.47
SHROOM1Q2M3G4 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SHROOM1Q2M3G4 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
SHROOM1Q2M3G4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM1Q2M3G4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.46■■■□□ 2.47
SHROOM1Q2M3G4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHROOM1Q2M3G4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
SHROOM1Q2M3G4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SHROOM1Q2M3G4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.43■■■□□ 2.46
SHROOM1Q2M3G4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SHROOM1Q2M3G4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SHROOM1Q2M3G4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.42■■■□□ 2.46
SHROOM1Q2M3G4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms