Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
ABCA4P78363 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
ABCA4P78363 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
ABCA4P78363 LINC00273-201ENST00000539813 1452 ntBASIC22.56■■□□□ 1.2
ABCA4P78363 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
ABCA4P78363 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ABCA4P78363 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ABCA4P78363 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ABCA4P78363 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ABCA4P78363 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.55■■□□□ 1.2
ABCA4P78363 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
ABCA4P78363 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
ABCA4P78363 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
ABCA4P78363 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
ABCA4P78363 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
ABCA4P78363 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ABCA4P78363 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ABCA4P78363 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.52■■□□□ 1.2
ABCA4P78363 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
ABCA4P78363 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
ABCA4P78363 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.51■■□□□ 1.19
ABCA4P78363 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
ABCA4P78363 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
ABCA4P78363 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
ABCA4P78363 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC22.5■■□□□ 1.19
ABCA4P78363 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ABCA4P78363 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
ABCA4P78363 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC22.49■■□□□ 1.19
ABCA4P78363 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.49■■□□□ 1.19
ABCA4P78363 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
ABCA4P78363 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
ABCA4P78363 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC22.48■■□□□ 1.19
ABCA4P78363 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
ABCA4P78363 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
ABCA4P78363 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
ABCA4P78363 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
ABCA4P78363 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC22.47■■□□□ 1.19
ABCA4P78363 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC22.47■■□□□ 1.19
ABCA4P78363 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
ABCA4P78363 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
ABCA4P78363 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC22.46■■□□□ 1.19
ABCA4P78363 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
ABCA4P78363 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
ABCA4P78363 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC22.45■■□□□ 1.18
ABCA4P78363 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC22.45■■□□□ 1.18
ABCA4P78363 RNF126P1-201ENST00000567452 1320 ntBASIC22.45■■□□□ 1.18
ABCA4P78363 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
ABCA4P78363 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
ABCA4P78363 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
ABCA4P78363 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.42■■□□□ 1.18
ABCA4P78363 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
ABCA4P78363 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
ABCA4P78363 GPX1-201ENST00000419349 1106 ntBASIC22.42■■□□□ 1.18
ABCA4P78363 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
ABCA4P78363 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
ABCA4P78363 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
ABCA4P78363 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC22.41■■□□□ 1.18
ABCA4P78363 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
ABCA4P78363 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 AC010864.1-201ENST00000609407 1511 ntBASIC22.4■■□□□ 1.18
ABCA4P78363 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA4P78363 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC22.39■■□□□ 1.17
ABCA4P78363 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
ABCA4P78363 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
ABCA4P78363 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ABCA4P78363 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA4P78363 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA4P78363 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
ABCA4P78363 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA4P78363 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA4P78363 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.36■■□□□ 1.17
ABCA4P78363 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA4P78363 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
ABCA4P78363 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA4P78363 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA4P78363 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC22.34■■□□□ 1.17
ABCA4P78363 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
ABCA4P78363 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
ABCA4P78363 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC22.33■■□□□ 1.17
ABCA4P78363 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC22.33■■□□□ 1.16
ABCA4P78363 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
ABCA4P78363 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
ABCA4P78363 CEP120-209ENST00000515110 606 ntTSL 3 BASIC22.33■■□□□ 1.16
ABCA4P78363 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
ABCA4P78363 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC22.32■■□□□ 1.16
ABCA4P78363 NTF6A-201ENST00000591175 560 ntBASIC22.32■■□□□ 1.16
ABCA4P78363 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
ABCA4P78363 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
ABCA4P78363 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
ABCA4P78363 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
ABCA4P78363 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
ABCA4P78363 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
ABCA4P78363 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms