Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.95■■□□□ 1.11
RAB3DO95716 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
RAB3DO95716 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RAB3DO95716 BX255925.1-201ENST00000566954 1854 ntBASIC21.94■■□□□ 1.1
RAB3DO95716 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RAB3DO95716 DYNLL1-208ENST00000550178 581 ntBASIC21.94■■□□□ 1.1
RAB3DO95716 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RAB3DO95716 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.94■■□□□ 1.1
RAB3DO95716 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RAB3DO95716 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RAB3DO95716 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
RAB3DO95716 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RAB3DO95716 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.94■■□□□ 1.1
RAB3DO95716 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
RAB3DO95716 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RAB3DO95716 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RAB3DO95716 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
RAB3DO95716 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RAB3DO95716 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.92■■□□□ 1.1
RAB3DO95716 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RAB3DO95716 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RAB3DO95716 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.91■■□□□ 1.1
RAB3DO95716 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RAB3DO95716 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RAB3DO95716 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
RAB3DO95716 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RAB3DO95716 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
RAB3DO95716 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
RAB3DO95716 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RAB3DO95716 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RAB3DO95716 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RAB3DO95716 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.9■■□□□ 1.1
RAB3DO95716 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.9■■□□□ 1.1
RAB3DO95716 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RAB3DO95716 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RAB3DO95716 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
RAB3DO95716 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RAB3DO95716 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
RAB3DO95716 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RAB3DO95716 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RAB3DO95716 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.88■■□□□ 1.09
RAB3DO95716 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
RAB3DO95716 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RAB3DO95716 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
RAB3DO95716 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RAB3DO95716 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
RAB3DO95716 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.85■■□□□ 1.09
RAB3DO95716 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RAB3DO95716 ZNRF2P1-201ENST00000441407 443 ntBASIC21.85■■□□□ 1.09
RAB3DO95716 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RAB3DO95716 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
RAB3DO95716 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.84■■□□□ 1.09
RAB3DO95716 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RAB3DO95716 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
RAB3DO95716 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.83■■□□□ 1.09
RAB3DO95716 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RAB3DO95716 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RAB3DO95716 AC010864.1-201ENST00000609407 1511 ntBASIC21.83■■□□□ 1.09
RAB3DO95716 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RAB3DO95716 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.83■■□□□ 1.09
RAB3DO95716 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RAB3DO95716 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.82■■□□□ 1.08
RAB3DO95716 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.82■■□□□ 1.08
RAB3DO95716 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
RAB3DO95716 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
RAB3DO95716 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
RAB3DO95716 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
RAB3DO95716 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RAB3DO95716 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
RAB3DO95716 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.81■■□□□ 1.08
RAB3DO95716 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RAB3DO95716 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.8■■□□□ 1.08
RAB3DO95716 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.8■■□□□ 1.08
RAB3DO95716 AL031258.1-201ENST00000623562 325 ntBASIC21.8■■□□□ 1.08
RAB3DO95716 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.79■■□□□ 1.08
RAB3DO95716 WASH5P-204ENST00000632292 975 ntBASIC21.79■■□□□ 1.08
RAB3DO95716 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.79■■□□□ 1.08
RAB3DO95716 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RAB3DO95716 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RAB3DO95716 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RAB3DO95716 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RAB3DO95716 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
RAB3DO95716 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
RAB3DO95716 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
RAB3DO95716 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RAB3DO95716 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.76■■□□□ 1.07
RAB3DO95716 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.76■■□□□ 1.07
RAB3DO95716 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RAB3DO95716 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RAB3DO95716 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RAB3DO95716 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RAB3DO95716 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
RAB3DO95716 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RAB3DO95716 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RAB3DO95716 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RAB3DO95716 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.74■■□□□ 1.07
RAB3DO95716 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.74■■□□□ 1.07
RAB3DO95716 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
RAB3DO95716 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
RAB3DO95716 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms